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NUDT9 (nudix hydrolase 9)

Identity

Alias_namesnudix (nucleoside diphosphate linked moiety X)-type motif 9
Alias_symbol (synonym)MGC3037
Other aliasNUDT10
HGNC (Hugo) NUDT9
LocusID (NCBI) 53343
Atlas_Id 56389
Location 4q22.1  [Link to chromosome band 4q22]
Location_base_pair Starts at 87422576 and ends at 87459454 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NUDT9   8056
Cards
Entrez_Gene (NCBI)NUDT9  53343  nudix hydrolase 9
AliasesNUDT10
GeneCards (Weizmann)NUDT9
Ensembl hg19 (Hinxton)ENSG00000170502 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170502 [Gene_View]  chr4:87422576-87459454 [Contig_View]  NUDT9 [Vega]
ICGC DataPortalENSG00000170502
TCGA cBioPortalNUDT9
AceView (NCBI)NUDT9
Genatlas (Paris)NUDT9
WikiGenes53343
SOURCE (Princeton)NUDT9
Genetics Home Reference (NIH)NUDT9
Genomic and cartography
GoldenPath hg38 (UCSC)NUDT9  -     chr4:87422576-87459454 +  4q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NUDT9  -     4q22.1   [Description]    (hg19-Feb_2009)
EnsemblNUDT9 - 4q22.1 [CytoView hg19]  NUDT9 - 4q22.1 [CytoView hg38]
Mapping of homologs : NCBINUDT9 [Mapview hg19]  NUDT9 [Mapview hg38]
OMIM606022   
Gene and transcription
Genbank (Entrez)AF265341 AF273028 AK027295 AK074845 AK075408
RefSeq transcript (Entrez)NM_001248011 NM_024047 NM_198038
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NUDT9
Cluster EST : UnigeneHs.149500 [ NCBI ]
CGAP (NCI)Hs.149500
Alternative Splicing GalleryENSG00000170502
Gene ExpressionNUDT9 [ NCBI-GEO ]   NUDT9 [ EBI - ARRAY_EXPRESS ]   NUDT9 [ SEEK ]   NUDT9 [ MEM ]
Gene Expression Viewer (FireBrowse)NUDT9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)53343
GTEX Portal (Tissue expression)NUDT9
Human Protein AtlasENSG00000170502-NUDT9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BW91   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BW91  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BW91
Splice isoforms : SwissVarQ9BW91
Catalytic activity : Enzyme3.6.1.13 [ Enzyme-Expasy ]   3.6.1.133.6.1.13 [ IntEnz-EBI ]   3.6.1.13 [ BRENDA ]   3.6.1.13 [ KEGG ]   
PhosPhoSitePlusQ9BW91
Domaine pattern : Prosite (Expaxy)NUDIX (PS51462)   
Domains : Interpro (EBI)NUDIX_hydrolase_dom    NUDIX_hydrolase_dom-like   
Domain families : Pfam (Sanger)NUDIX (PF00293)   
Domain families : Pfam (NCBI)pfam00293   
Conserved Domain (NCBI)NUDT9
DMDM Disease mutations53343
Blocks (Seattle)NUDT9
PDB (SRS)1Q33    1QVJ   
PDB (PDBSum)1Q33    1QVJ   
PDB (IMB)1Q33    1QVJ   
PDB (RSDB)1Q33    1QVJ   
Structural Biology KnowledgeBase1Q33    1QVJ   
SCOP (Structural Classification of Proteins)1Q33    1QVJ   
CATH (Classification of proteins structures)1Q33    1QVJ   
SuperfamilyQ9BW91
Human Protein Atlas [tissue]ENSG00000170502-NUDT9 [tissue]
Peptide AtlasQ9BW91
HPRD09353
IPIIPI00031558   IPI00415040   IPI00965775   IPI00965426   IPI00965118   
Protein Interaction databases
DIP (DOE-UCLA)Q9BW91
IntAct (EBI)Q9BW91
FunCoupENSG00000170502
BioGRIDNUDT9
STRING (EMBL)NUDT9
ZODIACNUDT9
Ontologies - Pathways
QuickGOQ9BW91
Ontology : AmiGOintracellular  mitochondrion  mitochondrion  mitochondrial matrix  ADP-sugar diphosphatase activity  cell junction  nuclear membrane  nucleobase-containing small molecule catabolic process  adenosine-diphosphatase activity  ADP catabolic process  IDP catabolic process  ADP-ribose diphosphatase activity  extracellular exosome  
Ontology : EGO-EBIintracellular  mitochondrion  mitochondrion  mitochondrial matrix  ADP-sugar diphosphatase activity  cell junction  nuclear membrane  nucleobase-containing small molecule catabolic process  adenosine-diphosphatase activity  ADP catabolic process  IDP catabolic process  ADP-ribose diphosphatase activity  extracellular exosome  
Pathways : KEGGPurine metabolism   
NDEx NetworkNUDT9
Atlas of Cancer Signalling NetworkNUDT9
Wikipedia pathwaysNUDT9
Orthology - Evolution
OrthoDB53343
GeneTree (enSembl)ENSG00000170502
Phylogenetic Trees/Animal Genes : TreeFamNUDT9
HOVERGENQ9BW91
HOGENOMQ9BW91
Homologs : HomoloGeneNUDT9
Homology/Alignments : Family Browser (UCSC)NUDT9
Gene fusions - Rearrangements
Tumor Fusion PortalNUDT9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUDT9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NUDT9
dbVarNUDT9
ClinVarNUDT9
1000_GenomesNUDT9 
Exome Variant ServerNUDT9
ExAC (Exome Aggregation Consortium)ENSG00000170502
GNOMAD BrowserENSG00000170502
Genetic variants : HAPMAP53343
Genomic Variants (DGV)NUDT9 [DGVbeta]
DECIPHERNUDT9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNUDT9 
Mutations
ICGC Data PortalNUDT9 
TCGA Data PortalNUDT9 
Broad Tumor PortalNUDT9
OASIS PortalNUDT9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNUDT9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNUDT9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NUDT9
DgiDB (Drug Gene Interaction Database)NUDT9
DoCM (Curated mutations)NUDT9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NUDT9 (select a term)
intoGenNUDT9
Cancer3DNUDT9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606022   
Orphanet
DisGeNETNUDT9
MedgenNUDT9
Genetic Testing Registry NUDT9
NextProtQ9BW91 [Medical]
TSGene53343
GENETestsNUDT9
Target ValidationNUDT9
Huge Navigator NUDT9 [HugePedia]
snp3D : Map Gene to Disease53343
BioCentury BCIQNUDT9
ClinGenNUDT9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD53343
Chemical/Pharm GKB GenePA31842
Clinical trialNUDT9
Miscellaneous
canSAR (ICR)NUDT9 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNUDT9
EVEXNUDT9
GoPubMedNUDT9
iHOPNUDT9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:26:59 CET 2017

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