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NUFIP1 (nuclear FMR1 interacting protein 1)

Identity

Alias (NCBI)NUFIP
Rsa1
bA540M5.1
HGNC (Hugo) NUFIP1
HGNC Alias symbNUFIP
HGNC Previous namenuclear fragile X mental retardation protein interacting protein 1
LocusID (NCBI) 26747
Atlas_Id 71036
Location 13q14.12  [Link to chromosome band 13q14]
Location_base_pair Starts at 44939249 and ends at 44989471 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)NUFIP1   8057
Cards
Entrez_Gene (NCBI)NUFIP1    nuclear FMR1 interacting protein 1
AliasesNUFIP; Rsa1; bA540M5.1
GeneCards (Weizmann)NUFIP1
Ensembl hg19 (Hinxton)ENSG00000083635 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000083635 [Gene_View]  ENSG00000083635 [Sequence]  chr13:44939249-44989471 [Contig_View]  NUFIP1 [Vega]
ICGC DataPortalENSG00000083635
TCGA cBioPortalNUFIP1
AceView (NCBI)NUFIP1
Genatlas (Paris)NUFIP1
SOURCE (Princeton)NUFIP1
Genetics Home Reference (NIH)NUFIP1
Genomic and cartography
GoldenPath hg38 (UCSC)NUFIP1  -     chr13:44939249-44989471 -  13q14.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NUFIP1  -     13q14.12   [Description]    (hg19-Feb_2009)
GoldenPathNUFIP1 - 13q14.12 [CytoView hg19]  NUFIP1 - 13q14.12 [CytoView hg38]
ImmunoBaseENSG00000083635
Genome Data Viewer NCBINUFIP1 [Mapview hg19]  
OMIM604354   
Gene and transcription
Genbank (Entrez)AF159548 AK314242 BC001436 BC017745 DA701559
RefSeq transcript (Entrez)NM_012345
Consensus coding sequences : CCDS (NCBI)NUFIP1
Gene ExpressionNUFIP1 [ NCBI-GEO ]   NUFIP1 [ EBI - ARRAY_EXPRESS ]   NUFIP1 [ SEEK ]   NUFIP1 [ MEM ]
Gene Expression Viewer (FireBrowse)NUFIP1 [ Firebrowse - Broad ]
GenevisibleExpression of NUFIP1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26747
GTEX Portal (Tissue expression)NUFIP1
Human Protein AtlasENSG00000083635-NUFIP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UHK0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UHK0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UHK0
PhosPhoSitePlusQ9UHK0
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)NUFIP1-like    NUFIP1_cons_dom    Znf_C2H2_jaz    Znf_C2H2_type   
Domain families : Pfam (Sanger)NUFIP1 (PF10453)    zf-C2H2_jaz (PF12171)   
Domain families : Pfam (NCBI)pfam10453    pfam12171   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)NUFIP1
PDB (RSDB)5L85   
PDB Europe5L85   
PDB (PDBSum)5L85   
PDB (IMB)5L85   
Structural Biology KnowledgeBase5L85   
SCOP (Structural Classification of Proteins)5L85   
CATH (Classification of proteins structures)5L85   
SuperfamilyQ9UHK0
AlphaFold pdb e-kbQ9UHK0   
Human Protein Atlas [tissue]ENSG00000083635-NUFIP1 [tissue]
HPRD05073
Protein Interaction databases
DIP (DOE-UCLA)Q9UHK0
IntAct (EBI)Q9UHK0
BioGRIDNUFIP1
STRING (EMBL)NUFIP1
ZODIACNUFIP1
Ontologies - Pathways
QuickGOQ9UHK0
Ontology : AmiGObox C/D snoRNP assembly  box C/D snoRNP assembly  fibrillar center  DNA binding  RNA binding  protein binding  nucleus  nucleoplasm  perichromatin fibrils  nucleolus  RNA processing  transcription elongation factor complex  nuclear matrix  cytosolic ribosome  snoRNA binding  protein-macromolecule adaptor activity  protein-containing complex  identical protein binding  positive regulation of transcription by RNA polymerase II  metal ion binding  presynaptic active zone  ATPase binding  pre-snoRNP complex  
Ontology : EGO-EBIbox C/D snoRNP assembly  box C/D snoRNP assembly  fibrillar center  DNA binding  RNA binding  protein binding  nucleus  nucleoplasm  perichromatin fibrils  nucleolus  RNA processing  transcription elongation factor complex  nuclear matrix  cytosolic ribosome  snoRNA binding  protein-macromolecule adaptor activity  protein-containing complex  identical protein binding  positive regulation of transcription by RNA polymerase II  metal ion binding  presynaptic active zone  ATPase binding  pre-snoRNP complex  
NDEx NetworkNUFIP1
Atlas of Cancer Signalling NetworkNUFIP1
Wikipedia pathwaysNUFIP1
Orthology - Evolution
OrthoDB26747
GeneTree (enSembl)ENSG00000083635
Phylogenetic Trees/Animal Genes : TreeFamNUFIP1
Homologs : HomoloGeneNUFIP1
Homology/Alignments : Family Browser (UCSC)NUFIP1
Gene fusions - Rearrangements
Fusion : QuiverNUFIP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUFIP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NUFIP1
dbVarNUFIP1
ClinVarNUFIP1
MonarchNUFIP1
1000_GenomesNUFIP1 
Exome Variant ServerNUFIP1
GNOMAD BrowserENSG00000083635
Varsome BrowserNUFIP1
ACMGNUFIP1 variants
VarityQ9UHK0
Genomic Variants (DGV)NUFIP1 [DGVbeta]
DECIPHERNUFIP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNUFIP1 
Mutations
ICGC Data PortalNUFIP1 
TCGA Data PortalNUFIP1 
Broad Tumor PortalNUFIP1
OASIS PortalNUFIP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNUFIP1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNUFIP1
Mutations and Diseases : HGMDNUFIP1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaNUFIP1
DgiDB (Drug Gene Interaction Database)NUFIP1
DoCM (Curated mutations)NUFIP1
CIViC (Clinical Interpretations of Variants in Cancer)NUFIP1
Cancer3DNUFIP1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604354   
Orphanet
DisGeNETNUFIP1
MedgenNUFIP1
Genetic Testing Registry NUFIP1
NextProtQ9UHK0 [Medical]
GENETestsNUFIP1
Target ValidationNUFIP1
Huge Navigator NUFIP1 [HugePedia]
ClinGenNUFIP1
Clinical trials, drugs, therapy
MyCancerGenomeNUFIP1
Protein Interactions : CTDNUFIP1
Pharm GKB GenePA31843
PharosQ9UHK0
Clinical trialNUFIP1
Miscellaneous
canSAR (ICR)NUFIP1
HarmonizomeNUFIP1
DataMed IndexNUFIP1
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXNUFIP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:13:20 CEST 2021

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