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NUFIP2 (NUFIP2, FMR1 interacting protein 2)

Identity

Alias_namesnuclear fragile X mental retardation protein interacting protein 2
Alias_symbol (synonym)KIAA1321
MGC117262
PIG1
182-FIP
FIP-82
82-FIP
Other alias
HGNC (Hugo) NUFIP2
LocusID (NCBI) 57532
Atlas_Id 71037
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 29255836 and ends at 29294148 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
IDO1 (8p11.21) / NUFIP2 (17q11.2)LHFPL5 (6p21.31) / NUFIP2 (17q11.2)MYO18A (17q11.2) / NUFIP2 (17q11.2)
NUFIP2 (17q11.2) / CPD (17q11.2)NUFIP2 (17q11.2) / NUFIP2 (17q11.2)NUFIP2 (17q11.2) / ZFP69B (1p34.2)
SGK1 (6q23.2) / NUFIP2 (17q11.2)SRRM2 (16p13.3) / NUFIP2 (17q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NUFIP2   17634
Cards
Entrez_Gene (NCBI)NUFIP2  57532  NUFIP2, FMR1 interacting protein 2
Aliases182-FIP; 82-FIP; FIP-82; PIG1
GeneCards (Weizmann)NUFIP2
Ensembl hg19 (Hinxton)ENSG00000108256 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000108256 [Gene_View]  chr17:29255836-29294148 [Contig_View]  NUFIP2 [Vega]
ICGC DataPortalENSG00000108256
TCGA cBioPortalNUFIP2
AceView (NCBI)NUFIP2
Genatlas (Paris)NUFIP2
WikiGenes57532
SOURCE (Princeton)NUFIP2
Genetics Home Reference (NIH)NUFIP2
Genomic and cartography
GoldenPath hg38 (UCSC)NUFIP2  -     chr17:29255836-29294148 -  17q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NUFIP2  -     17q11.2   [Description]    (hg19-Feb_2009)
EnsemblNUFIP2 - 17q11.2 [CytoView hg19]  NUFIP2 - 17q11.2 [CytoView hg38]
Mapping of homologs : NCBINUFIP2 [Mapview hg19]  NUFIP2 [Mapview hg38]
OMIM609356   
Gene and transcription
Genbank (Entrez)AB037742 AJ493465 AK001838 AK293075 AK297732
RefSeq transcript (Entrez)NM_020772
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NUFIP2
Cluster EST : UnigeneHs.462598 [ NCBI ]
CGAP (NCI)Hs.462598
Alternative Splicing GalleryENSG00000108256
Gene ExpressionNUFIP2 [ NCBI-GEO ]   NUFIP2 [ EBI - ARRAY_EXPRESS ]   NUFIP2 [ SEEK ]   NUFIP2 [ MEM ]
Gene Expression Viewer (FireBrowse)NUFIP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57532
GTEX Portal (Tissue expression)NUFIP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z417   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z417  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z417
Splice isoforms : SwissVarQ7Z417
PhosPhoSitePlusQ7Z417
Domains : Interpro (EBI)NUFIP2   
Domain families : Pfam (Sanger)NUFIP2 (PF15293)   
Domain families : Pfam (NCBI)pfam15293   
Conserved Domain (NCBI)NUFIP2
DMDM Disease mutations57532
Blocks (Seattle)NUFIP2
SuperfamilyQ7Z417
Human Protein AtlasENSG00000108256
Peptide AtlasQ7Z417
HPRD11764
IPIIPI00002349   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z417
IntAct (EBI)Q7Z417
FunCoupENSG00000108256
BioGRIDNUFIP2
STRING (EMBL)NUFIP2
ZODIACNUFIP2
Ontologies - Pathways
QuickGOQ7Z417
Ontology : AmiGORNA binding  protein binding  nucleus  nucleoplasm  cytoplasm  cytosol  cytoplasmic stress granule  membrane  nuclear body  polysomal ribosome  
Ontology : EGO-EBIRNA binding  protein binding  nucleus  nucleoplasm  cytoplasm  cytosol  cytoplasmic stress granule  membrane  nuclear body  polysomal ribosome  
NDEx NetworkNUFIP2
Atlas of Cancer Signalling NetworkNUFIP2
Wikipedia pathwaysNUFIP2
Orthology - Evolution
OrthoDB57532
GeneTree (enSembl)ENSG00000108256
Phylogenetic Trees/Animal Genes : TreeFamNUFIP2
HOVERGENQ7Z417
HOGENOMQ7Z417
Homologs : HomoloGeneNUFIP2
Homology/Alignments : Family Browser (UCSC)NUFIP2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUFIP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NUFIP2
dbVarNUFIP2
ClinVarNUFIP2
1000_GenomesNUFIP2 
Exome Variant ServerNUFIP2
ExAC (Exome Aggregation Consortium)NUFIP2 (select the gene name)
Genetic variants : HAPMAP57532
Genomic Variants (DGV)NUFIP2 [DGVbeta]
DECIPHERNUFIP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNUFIP2 
Mutations
ICGC Data PortalNUFIP2 
TCGA Data PortalNUFIP2 
Broad Tumor PortalNUFIP2
OASIS PortalNUFIP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNUFIP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNUFIP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NUFIP2
DgiDB (Drug Gene Interaction Database)NUFIP2
DoCM (Curated mutations)NUFIP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NUFIP2 (select a term)
intoGenNUFIP2
Cancer3DNUFIP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609356   
Orphanet
MedgenNUFIP2
Genetic Testing Registry NUFIP2
NextProtQ7Z417 [Medical]
TSGene57532
GENETestsNUFIP2
Target ValidationNUFIP2
Huge Navigator NUFIP2 [HugePedia]
snp3D : Map Gene to Disease57532
BioCentury BCIQNUFIP2
ClinGenNUFIP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57532
Chemical/Pharm GKB GenePA143485564
Clinical trialNUFIP2
Miscellaneous
canSAR (ICR)NUFIP2 (select the gene name)
Probes
Litterature
PubMed37 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNUFIP2
EVEXNUFIP2
GoPubMedNUFIP2
iHOPNUFIP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:33:18 CEST 2017

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