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NUGGC (nuclear GTPase, germinal center associated)

Identity

Alias_namesC8orf80
chromosome 8 open reading frame 80
Alias_symbol (synonym)HMFN0672
SLIP-GC
Other alias
HGNC (Hugo) NUGGC
LocusID (NCBI) 389643
Atlas_Id 71038
Location 8p21.1  [Link to chromosome band 8p21]
Location_base_pair Starts at 28021964 and ends at 28083871 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NUGGC   33550
Cards
Entrez_Gene (NCBI)NUGGC  389643  nuclear GTPase, germinal center associated
AliasesC8orf80; HMFN0672; SLIP-GC
GeneCards (Weizmann)NUGGC
Ensembl hg19 (Hinxton)ENSG00000189233 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000189233 [Gene_View]  chr8:28021964-28083871 [Contig_View]  NUGGC [Vega]
ICGC DataPortalENSG00000189233
TCGA cBioPortalNUGGC
AceView (NCBI)NUGGC
Genatlas (Paris)NUGGC
WikiGenes389643
SOURCE (Princeton)NUGGC
Genetics Home Reference (NIH)NUGGC
Genomic and cartography
GoldenPath hg38 (UCSC)NUGGC  -     chr8:28021964-28083871 -  8p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NUGGC  -     8p21.1   [Description]    (hg19-Feb_2009)
EnsemblNUGGC - 8p21.1 [CytoView hg19]  NUGGC - 8p21.1 [CytoView hg38]
Mapping of homologs : NCBINUGGC [Mapview hg19]  NUGGC [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA482187 AA768146 AB075870 AK129923 BC160159
RefSeq transcript (Entrez)NM_001010906
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NUGGC
Cluster EST : UnigeneHs.370129 [ NCBI ]
CGAP (NCI)Hs.370129
Alternative Splicing GalleryENSG00000189233
Gene ExpressionNUGGC [ NCBI-GEO ]   NUGGC [ EBI - ARRAY_EXPRESS ]   NUGGC [ SEEK ]   NUGGC [ MEM ]
Gene Expression Viewer (FireBrowse)NUGGC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389643
GTEX Portal (Tissue expression)NUGGC
Human Protein AtlasENSG00000189233-NUGGC [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ68CJ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ68CJ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ68CJ6
Splice isoforms : SwissVarQ68CJ6
Catalytic activity : Enzyme3.6.1.- [ Enzyme-Expasy ]   3.6.1.-3.6.1.- [ IntEnz-EBI ]   3.6.1.- [ BRENDA ]   3.6.1.- [ KEGG ]   
PhosPhoSitePlusQ68CJ6
Domains : Interpro (EBI)Dynamin_SF    P-loop_NTPase   
Domain families : Pfam (Sanger)Dynamin_N (PF00350)   
Domain families : Pfam (NCBI)pfam00350   
Conserved Domain (NCBI)NUGGC
DMDM Disease mutations389643
Blocks (Seattle)NUGGC
SuperfamilyQ68CJ6
Human Protein Atlas [tissue]ENSG00000189233-NUGGC [tissue]
Peptide AtlasQ68CJ6
IPIIPI00856109   IPI00785036   IPI00926165   
Protein Interaction databases
DIP (DOE-UCLA)Q68CJ6
IntAct (EBI)Q68CJ6
FunCoupENSG00000189233
BioGRIDNUGGC
STRING (EMBL)NUGGC
ZODIACNUGGC
Ontologies - Pathways
QuickGOQ68CJ6
Ontology : AmiGOGTP binding  nuclear speck  hydrolase activity  
Ontology : EGO-EBIGTP binding  nuclear speck  hydrolase activity  
NDEx NetworkNUGGC
Atlas of Cancer Signalling NetworkNUGGC
Wikipedia pathwaysNUGGC
Orthology - Evolution
OrthoDB389643
GeneTree (enSembl)ENSG00000189233
Phylogenetic Trees/Animal Genes : TreeFamNUGGC
HOVERGENQ68CJ6
HOGENOMQ68CJ6
Homologs : HomoloGeneNUGGC
Homology/Alignments : Family Browser (UCSC)NUGGC
Gene fusions - Rearrangements
Fusion: Tumor Portal NUGGC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUGGC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NUGGC
dbVarNUGGC
ClinVarNUGGC
1000_GenomesNUGGC 
Exome Variant ServerNUGGC
ExAC (Exome Aggregation Consortium)ENSG00000189233
GNOMAD BrowserENSG00000189233
Genetic variants : HAPMAP389643
Genomic Variants (DGV)NUGGC [DGVbeta]
DECIPHERNUGGC [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNUGGC 
Mutations
ICGC Data PortalNUGGC 
TCGA Data PortalNUGGC 
Broad Tumor PortalNUGGC
OASIS PortalNUGGC [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNUGGC
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NUGGC
DgiDB (Drug Gene Interaction Database)NUGGC
DoCM (Curated mutations)NUGGC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NUGGC (select a term)
intoGenNUGGC
Cancer3DNUGGC(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNUGGC
Genetic Testing Registry NUGGC
NextProtQ68CJ6 [Medical]
TSGene389643
GENETestsNUGGC
Target ValidationNUGGC
Huge Navigator NUGGC [HugePedia]
snp3D : Map Gene to Disease389643
BioCentury BCIQNUGGC
ClinGenNUGGC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389643
Chemical/Pharm GKB GenePA162380784
Clinical trialNUGGC
Miscellaneous
canSAR (ICR)NUGGC (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNUGGC
EVEXNUGGC
GoPubMedNUGGC
iHOPNUGGC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Nov 9 12:19:36 CET 2017

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