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NUP155 (nucleoporin 155)

Identity

Alias_namesnucleoporin 155kDa
Alias_symbol (synonym)KIAA0791
N155
Other aliasATFB15
HGNC (Hugo) NUP155
LocusID (NCBI) 9631
Atlas_Id 71039
Location 5p13.2  [Link to chromosome band 5p13]
Location_base_pair Starts at 37291633 and ends at 37371126 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C5orf42 (5p13.2) / NUP155 (5p13.2)NUP155 (5p13.2) / TRIO (5p15.2)NUP155 (5p13.2) / ZFYVE26 (14q24.1)
PRRC2B (9q34.13) / NUP155 (5p13.2)NUP155 TRIONUP155 ZFYVE26

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NUP155   8063
Cards
Entrez_Gene (NCBI)NUP155  9631  nucleoporin 155
AliasesATFB15; N155
GeneCards (Weizmann)NUP155
Ensembl hg19 (Hinxton)ENSG00000113569 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000113569 [Gene_View]  chr5:37291633-37371126 [Contig_View]  NUP155 [Vega]
ICGC DataPortalENSG00000113569
TCGA cBioPortalNUP155
AceView (NCBI)NUP155
Genatlas (Paris)NUP155
WikiGenes9631
SOURCE (Princeton)NUP155
Genetics Home Reference (NIH)NUP155
Genomic and cartography
GoldenPath hg38 (UCSC)NUP155  -     chr5:37291633-37371126 -  5p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NUP155  -     5p13.2   [Description]    (hg19-Feb_2009)
EnsemblNUP155 - 5p13.2 [CytoView hg19]  NUP155 - 5p13.2 [CytoView hg38]
Mapping of homologs : NCBINUP155 [Mapview hg19]  NUP155 [Mapview hg38]
OMIM606694   615770   
Gene and transcription
Genbank (Entrez)AB018334 AI037962 AJ007558 AK002103 AK297143
RefSeq transcript (Entrez)NM_001278312 NM_004298 NM_153485
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NUP155
Cluster EST : UnigeneHs.547696 [ NCBI ]
CGAP (NCI)Hs.547696
Alternative Splicing GalleryENSG00000113569
Gene ExpressionNUP155 [ NCBI-GEO ]   NUP155 [ EBI - ARRAY_EXPRESS ]   NUP155 [ SEEK ]   NUP155 [ MEM ]
Gene Expression Viewer (FireBrowse)NUP155 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9631
GTEX Portal (Tissue expression)NUP155
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75694   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75694  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75694
Splice isoforms : SwissVarO75694
PhosPhoSitePlusO75694
Domains : Interpro (EBI)Nucleoporin_Nup133/Nup155_C    Nucleoporin_Nup133/Nup155_N    Nucleoporin_Nup155   
Domain families : Pfam (Sanger)Nucleoporin_C (PF03177)    Nucleoporin_N (PF08801)   
Domain families : Pfam (NCBI)pfam03177    pfam08801   
Conserved Domain (NCBI)NUP155
DMDM Disease mutations9631
Blocks (Seattle)NUP155
PDB (SRS)5A9Q    5IJN    5IJO   
PDB (PDBSum)5A9Q    5IJN    5IJO   
PDB (IMB)5A9Q    5IJN    5IJO   
PDB (RSDB)5A9Q    5IJN    5IJO   
Structural Biology KnowledgeBase5A9Q    5IJN    5IJO   
SCOP (Structural Classification of Proteins)5A9Q    5IJN    5IJO   
CATH (Classification of proteins structures)5A9Q    5IJN    5IJO   
SuperfamilyO75694
Human Protein AtlasENSG00000113569
Peptide AtlasO75694
HPRD05984
IPIIPI00026625   IPI00376609   IPI01012167   IPI00965680   IPI00964198   
Protein Interaction databases
DIP (DOE-UCLA)O75694
IntAct (EBI)O75694
FunCoupENSG00000113569
BioGRIDNUP155
STRING (EMBL)NUP155
ZODIACNUP155
Ontologies - Pathways
QuickGOO75694
Ontology : AmiGOtranscription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery  transporter activity  protein binding  nuclear envelope  nuclear envelope  RNA export from nucleus  mRNA export from nucleus  tRNA export from nucleus  protein import into nucleus  nuclear envelope organization  mitotic nuclear envelope disassembly  regulation of glucose transport  membrane  viral process  protein sumoylation  structural constituent of nuclear pore  viral transcription  gene silencing by RNA  nuclear membrane  protein targeting to nuclear inner membrane  nuclear pore inner ring  intracellular transport of virus  atrial cardiac muscle cell action potential  regulation of cellular response to heat  
Ontology : EGO-EBItranscription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery  transporter activity  protein binding  nuclear envelope  nuclear envelope  RNA export from nucleus  mRNA export from nucleus  tRNA export from nucleus  protein import into nucleus  nuclear envelope organization  mitotic nuclear envelope disassembly  regulation of glucose transport  membrane  viral process  protein sumoylation  structural constituent of nuclear pore  viral transcription  gene silencing by RNA  nuclear membrane  protein targeting to nuclear inner membrane  nuclear pore inner ring  intracellular transport of virus  atrial cardiac muscle cell action potential  regulation of cellular response to heat  
Pathways : KEGGRNA transport   
NDEx NetworkNUP155
Atlas of Cancer Signalling NetworkNUP155
Wikipedia pathwaysNUP155
Orthology - Evolution
OrthoDB9631
GeneTree (enSembl)ENSG00000113569
Phylogenetic Trees/Animal Genes : TreeFamNUP155
HOVERGENO75694
HOGENOMO75694
Homologs : HomoloGeneNUP155
Homology/Alignments : Family Browser (UCSC)NUP155
Gene fusions - Rearrangements
Fusion: TCGANUP155 TRIO
Fusion: TCGANUP155 ZFYVE26
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUP155 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NUP155
dbVarNUP155
ClinVarNUP155
1000_GenomesNUP155 
Exome Variant ServerNUP155
ExAC (Exome Aggregation Consortium)NUP155 (select the gene name)
Genetic variants : HAPMAP9631
Genomic Variants (DGV)NUP155 [DGVbeta]
DECIPHERNUP155 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNUP155 
Mutations
ICGC Data PortalNUP155 
TCGA Data PortalNUP155 
Broad Tumor PortalNUP155
OASIS PortalNUP155 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNUP155  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNUP155
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NUP155
DgiDB (Drug Gene Interaction Database)NUP155
DoCM (Curated mutations)NUP155 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NUP155 (select a term)
intoGenNUP155
Cancer3DNUP155(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606694    615770   
Orphanet8592   
MedgenNUP155
Genetic Testing Registry NUP155
NextProtO75694 [Medical]
TSGene9631
GENETestsNUP155
Target ValidationNUP155
Huge Navigator NUP155 [HugePedia]
snp3D : Map Gene to Disease9631
BioCentury BCIQNUP155
ClinGenNUP155
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9631
Chemical/Pharm GKB GenePA31849
Clinical trialNUP155
Miscellaneous
canSAR (ICR)NUP155 (select the gene name)
Probes
Litterature
PubMed47 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNUP155
EVEXNUP155
GoPubMedNUP155
iHOPNUP155
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:33:18 CEST 2017

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