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NUP160 (nucleoporin 160kDa)

Identity

Alias_namesnucleoporin 160kDa
Alias_symbol (synonym)KIAA0197
FLJ22583
Other alias-
HGNC (Hugo) NUP160
LocusID (NCBI) 23279
Atlas_Id 46690
Location 11p11.2  [Link to chromosome band 11p11]
Location_base_pair Starts at 47861053 and ends at 47870096 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NUP160 (11p11.2) / GLOD4 (17p13.3)NUP160 (11p11.2) / RPS6 (9p22.1)PSEN2 (1q42.13) / NUP160 (11p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(7;9)(q11;p12) PAX5/POM121


External links

Nomenclature
HGNC (Hugo)NUP160   18017
Cards
Entrez_Gene (NCBI)NUP160  23279  nucleoporin 160kDa
Aliases
GeneCards (Weizmann)NUP160
Ensembl hg19 (Hinxton)ENSG00000030066 [Gene_View]  chr11:47861053-47870096 [Contig_View]  NUP160 [Vega]
Ensembl hg38 (Hinxton)ENSG00000030066 [Gene_View]  chr11:47861053-47870096 [Contig_View]  NUP160 [Vega]
ICGC DataPortalENSG00000030066
TCGA cBioPortalNUP160
AceView (NCBI)NUP160
Genatlas (Paris)NUP160
WikiGenes23279
SOURCE (Princeton)NUP160
Genetics Home Reference (NIH)NUP160
Genomic and cartography
GoldenPath hg19 (UCSC)NUP160  -     chr11:47861053-47870096 -  11p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NUP160  -     11p11.2   [Description]    (hg38-Dec_2013)
EnsemblNUP160 - 11p11.2 [CytoView hg19]  NUP160 - 11p11.2 [CytoView hg38]
Mapping of homologs : NCBINUP160 [Mapview hg19]  NUP160 [Mapview hg38]
OMIM607614   
Gene and transcription
Genbank (Entrez)AK026236 AK302396 AK304308 AL832029 AL832813
RefSeq transcript (Entrez)NM_001318399 NM_015231
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_009237 NW_004929378
Consensus coding sequences : CCDS (NCBI)NUP160
Cluster EST : UnigeneHs.744107 [ NCBI ]
CGAP (NCI)Hs.744107
Alternative Splicing GalleryENSG00000030066
Gene ExpressionNUP160 [ NCBI-GEO ]   NUP160 [ EBI - ARRAY_EXPRESS ]   NUP160 [ SEEK ]   NUP160 [ MEM ]
Gene Expression Viewer (FireBrowse)NUP160 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23279
GTEX Portal (Tissue expression)NUP160
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ12769   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ12769  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ12769
Splice isoforms : SwissVarQ12769
PhosPhoSitePlusQ12769
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NUP160
DMDM Disease mutations23279
Blocks (Seattle)NUP160
PDB (SRS)5A9Q   
PDB (PDBSum)5A9Q   
PDB (IMB)5A9Q   
PDB (RSDB)5A9Q   
Structural Biology KnowledgeBase5A9Q   
SCOP (Structural Classification of Proteins)5A9Q   
CATH (Classification of proteins structures)5A9Q   
SuperfamilyQ12769
Human Protein AtlasENSG00000030066
Peptide AtlasQ12769
HPRD16254
IPIIPI00748807   IPI00221235   IPI00909318   IPI00953414   IPI00978986   IPI00985162   IPI00983099   
Protein Interaction databases
DIP (DOE-UCLA)Q12769
IntAct (EBI)Q12769
FunCoupENSG00000030066
BioGRIDNUP160
STRING (EMBL)NUP160
ZODIACNUP160
Ontologies - Pathways
QuickGOQ12769
Ontology : AmiGOkinetochore  nucleocytoplasmic transporter activity  protein binding  nuclear envelope  nuclear pore  cytosol  mRNA export from nucleus  mRNA export from nucleus  tRNA export from nucleus  sister chromatid cohesion  mitotic nuclear envelope disassembly  regulation of glucose transport  protein transport  viral process  protein sumoylation  viral transcription  gene silencing by RNA  nuclear pore outer ring  nuclear pore outer ring  intracellular transport of virus  regulation of cellular response to heat  
Ontology : EGO-EBIkinetochore  nucleocytoplasmic transporter activity  protein binding  nuclear envelope  nuclear pore  cytosol  mRNA export from nucleus  mRNA export from nucleus  tRNA export from nucleus  sister chromatid cohesion  mitotic nuclear envelope disassembly  regulation of glucose transport  protein transport  viral process  protein sumoylation  viral transcription  gene silencing by RNA  nuclear pore outer ring  nuclear pore outer ring  intracellular transport of virus  regulation of cellular response to heat  
Pathways : KEGGRNA transport   
NDEx NetworkNUP160
Atlas of Cancer Signalling NetworkNUP160
Wikipedia pathwaysNUP160
Orthology - Evolution
OrthoDB23279
GeneTree (enSembl)ENSG00000030066
Phylogenetic Trees/Animal Genes : TreeFamNUP160
HOVERGENQ12769
HOGENOMQ12769
Homologs : HomoloGeneNUP160
Homology/Alignments : Family Browser (UCSC)NUP160
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUP160 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NUP160
dbVarNUP160
ClinVarNUP160
1000_GenomesNUP160 
Exome Variant ServerNUP160
ExAC (Exome Aggregation Consortium)NUP160 (select the gene name)
Genetic variants : HAPMAP23279
Genomic Variants (DGV)NUP160 [DGVbeta]
DECIPHER (Syndromes)11:47861053-47870096  ENSG00000030066
CONAN: Copy Number AnalysisNUP160 
Mutations
ICGC Data PortalNUP160 
TCGA Data PortalNUP160 
Broad Tumor PortalNUP160
OASIS PortalNUP160 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNUP160  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNUP160
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NUP160
DgiDB (Drug Gene Interaction Database)NUP160
DoCM (Curated mutations)NUP160 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NUP160 (select a term)
intoGenNUP160
Cancer3DNUP160(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607614   
Orphanet
MedgenNUP160
Genetic Testing Registry NUP160
NextProtQ12769 [Medical]
TSGene23279
GENETestsNUP160
Huge Navigator NUP160 [HugePedia]
snp3D : Map Gene to Disease23279
BioCentury BCIQNUP160
ClinGenNUP160
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23279
Chemical/Pharm GKB GenePA31850
Clinical trialNUP160
Miscellaneous
canSAR (ICR)NUP160 (select the gene name)
Probes
Litterature
PubMed48 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNUP160
EVEXNUP160
GoPubMedNUP160
iHOPNUP160
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:12:53 CEST 2017

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