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NUP205 (nucleoporin 205)

Identity

Alias_namesC7orf14
chromosome 7 open reading frame 14
nucleoporin 205kDa
Alias_symbol (synonym)KIAA0225
Other aliasNPHS13
HGNC (Hugo) NUP205
LocusID (NCBI) 23165
Atlas_Id 46956
Location 7q33  [Link to chromosome band 7q33]
Location_base_pair Starts at 135557914 and ends at 135648751 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NUP205 (7q33) / CCDC136 (7q32.1)NUP205 (7q33) / NUP205 (7q33)NUP205 (7q33) / WDR91 (7q33)
NUP205 7q33 / CCDC136 7q32.1NUP205 7q33 / WDR91 7q33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NUP205   18658
Cards
Entrez_Gene (NCBI)NUP205  23165  nucleoporin 205
AliasesC7orf14; NPHS13
GeneCards (Weizmann)NUP205
Ensembl hg19 (Hinxton)ENSG00000155561 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000155561 [Gene_View]  chr7:135557914-135648751 [Contig_View]  NUP205 [Vega]
ICGC DataPortalENSG00000155561
TCGA cBioPortalNUP205
AceView (NCBI)NUP205
Genatlas (Paris)NUP205
WikiGenes23165
SOURCE (Princeton)NUP205
Genetics Home Reference (NIH)NUP205
Genomic and cartography
GoldenPath hg38 (UCSC)NUP205  -     chr7:135557914-135648751 +  7q33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NUP205  -     7q33   [Description]    (hg19-Feb_2009)
EnsemblNUP205 - 7q33 [CytoView hg19]  NUP205 - 7q33 [CytoView hg38]
Mapping of homologs : NCBINUP205 [Mapview hg19]  NUP205 [Mapview hg38]
OMIM614352   616893   
Gene and transcription
Genbank (Entrez)AK293497 AK297307 BC044255 BC063612 BC073947
RefSeq transcript (Entrez)NM_001329434 NM_015135
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NUP205
Cluster EST : UnigeneHs.743250 [ NCBI ]
CGAP (NCI)Hs.743250
Alternative Splicing GalleryENSG00000155561
Gene ExpressionNUP205 [ NCBI-GEO ]   NUP205 [ EBI - ARRAY_EXPRESS ]   NUP205 [ SEEK ]   NUP205 [ MEM ]
Gene Expression Viewer (FireBrowse)NUP205 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23165
GTEX Portal (Tissue expression)NUP205
Human Protein AtlasENSG00000155561-NUP205 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92621   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92621  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92621
Splice isoforms : SwissVarQ92621
PhosPhoSitePlusQ92621
Domains : Interpro (EBI)Nup186/Nup192/Nup205   
Domain families : Pfam (Sanger)Nup192 (PF11894)   
Domain families : Pfam (NCBI)pfam11894   
Conserved Domain (NCBI)NUP205
DMDM Disease mutations23165
Blocks (Seattle)NUP205
PDB (SRS)5IJN    5IJO   
PDB (PDBSum)5IJN    5IJO   
PDB (IMB)5IJN    5IJO   
PDB (RSDB)5IJN    5IJO   
Structural Biology KnowledgeBase5IJN    5IJO   
SCOP (Structural Classification of Proteins)5IJN    5IJO   
CATH (Classification of proteins structures)5IJN    5IJO   
SuperfamilyQ92621
Human Protein Atlas [tissue]ENSG00000155561-NUP205 [tissue]
Peptide AtlasQ92621
HPRD17653
IPIIPI00783781   IPI00909446   IPI00925071   IPI00925259   
Protein Interaction databases
DIP (DOE-UCLA)Q92621
IntAct (EBI)Q92621
FunCoupENSG00000155561
BioGRIDNUP205
STRING (EMBL)NUP205
ZODIACNUP205
Ontologies - Pathways
QuickGOQ92621
Ontology : AmiGOprotein binding  nuclear envelope  nuclear pore  nuclear pore  mRNA export from nucleus  tRNA export from nucleus  nucleocytoplasmic transport  mitotic nuclear envelope disassembly  regulation of glucose transport  membrane  viral process  protein sumoylation  structural constituent of nuclear pore  viral transcription  gene silencing by RNA  nuclear membrane  nuclear periphery  nuclear pore inner ring  nuclear pore complex assembly  intracellular transport of virus  regulation of cellular response to heat  
Ontology : EGO-EBIprotein binding  nuclear envelope  nuclear pore  nuclear pore  mRNA export from nucleus  tRNA export from nucleus  nucleocytoplasmic transport  mitotic nuclear envelope disassembly  regulation of glucose transport  membrane  viral process  protein sumoylation  structural constituent of nuclear pore  viral transcription  gene silencing by RNA  nuclear membrane  nuclear periphery  nuclear pore inner ring  nuclear pore complex assembly  intracellular transport of virus  regulation of cellular response to heat  
Pathways : KEGGRNA transport   
NDEx NetworkNUP205
Atlas of Cancer Signalling NetworkNUP205
Wikipedia pathwaysNUP205
Orthology - Evolution
OrthoDB23165
GeneTree (enSembl)ENSG00000155561
Phylogenetic Trees/Animal Genes : TreeFamNUP205
HOVERGENQ92621
HOGENOMQ92621
Homologs : HomoloGeneNUP205
Homology/Alignments : Family Browser (UCSC)NUP205
Gene fusions - Rearrangements
Fusion : MitelmanNUP205/CCDC136 [7q33/7q32.1]  
Fusion: TCGA_MDACCNUP205 7q33 CCDC136 7q32.1 LUAD
Fusion: TCGA_MDACCNUP205 7q33 WDR91 7q33 KIRC
Tumor Fusion PortalNUP205
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUP205 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NUP205
dbVarNUP205
ClinVarNUP205
1000_GenomesNUP205 
Exome Variant ServerNUP205
ExAC (Exome Aggregation Consortium)ENSG00000155561
GNOMAD BrowserENSG00000155561
Genetic variants : HAPMAP23165
Genomic Variants (DGV)NUP205 [DGVbeta]
DECIPHERNUP205 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNUP205 
Mutations
ICGC Data PortalNUP205 
TCGA Data PortalNUP205 
Broad Tumor PortalNUP205
OASIS PortalNUP205 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNUP205  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNUP205
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NUP205
DgiDB (Drug Gene Interaction Database)NUP205
DoCM (Curated mutations)NUP205 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NUP205 (select a term)
intoGenNUP205
Cancer3DNUP205(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614352    616893   
Orphanet12191   
DisGeNETNUP205
MedgenNUP205
Genetic Testing Registry NUP205
NextProtQ92621 [Medical]
TSGene23165
GENETestsNUP205
Target ValidationNUP205
Huge Navigator NUP205 [HugePedia]
snp3D : Map Gene to Disease23165
BioCentury BCIQNUP205
ClinGenNUP205
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23165
Chemical/Pharm GKB GenePA38624
Clinical trialNUP205
Miscellaneous
canSAR (ICR)NUP205 (select the gene name)
Probes
Litterature
PubMed45 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNUP205
EVEXNUP205
GoPubMedNUP205
iHOPNUP205
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:27:00 CET 2017

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