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NUP210 (nucleoporin 210)

Identity

Alias_namesnucleoporin 210kDa
Alias_symbol (synonym)GP210
POM210
FLJ22389
KIAA0906
Other alias
HGNC (Hugo) NUP210
LocusID (NCBI) 23225
Atlas_Id 46790
Location 3p25.1  [Link to chromosome band 3p25]
Location_base_pair Starts at 13316230 and ends at 13420319 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CASP10 (2q33.1) / NUP210 (3p25.1)MALAT1 (11q13.1) / NUP210 (3p25.1)NUP210 (3p25.1) / FBLN2 (3p25.1)
NUP210 (3p25.1) / FBXO4 (5p13.1)NUP210 (3p25.1) / RPS4X (Xq13.1)NUP210 (3p25.1) / RSRC1 (3q25.32)
NUP210 (3p25.1) / WNT7A (3p25.1)SURF2 (9q34.2) / NUP210 (3p25.1)UBE2E2 (3p24.3) / NUP210 (3p25.1)
NUP210 3p25.1 / FBLN2 3p25.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(7;9)(q11;p12) PAX5/POM121


External links

Nomenclature
HGNC (Hugo)NUP210   30052
Cards
Entrez_Gene (NCBI)NUP210  23225  nucleoporin 210
AliasesGP210; POM210
GeneCards (Weizmann)NUP210
Ensembl hg19 (Hinxton)ENSG00000132182 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132182 [Gene_View]  chr3:13316230-13420319 [Contig_View]  NUP210 [Vega]
ICGC DataPortalENSG00000132182
TCGA cBioPortalNUP210
AceView (NCBI)NUP210
Genatlas (Paris)NUP210
WikiGenes23225
SOURCE (Princeton)NUP210
Genetics Home Reference (NIH)NUP210
Genomic and cartography
GoldenPath hg38 (UCSC)NUP210  -     chr3:13316230-13420319 -  3p25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NUP210  -     3p25.1   [Description]    (hg19-Feb_2009)
EnsemblNUP210 - 3p25.1 [CytoView hg19]  NUP210 - 3p25.1 [CytoView hg38]
Mapping of homologs : NCBINUP210 [Mapview hg19]  NUP210 [Mapview hg38]
OMIM607703   
Gene and transcription
Genbank (Entrez)AA909765 AB020713 AK026042 AK074101 AK075545
RefSeq transcript (Entrez)NM_024923
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NUP210
Cluster EST : UnigeneHs.475525 [ NCBI ]
CGAP (NCI)Hs.475525
Alternative Splicing GalleryENSG00000132182
Gene ExpressionNUP210 [ NCBI-GEO ]   NUP210 [ EBI - ARRAY_EXPRESS ]   NUP210 [ SEEK ]   NUP210 [ MEM ]
Gene Expression Viewer (FireBrowse)NUP210 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23225
GTEX Portal (Tissue expression)NUP210
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TEM1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TEM1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TEM1
Splice isoforms : SwissVarQ8TEM1
PhosPhoSitePlusQ8TEM1
Domains : Interpro (EBI)Big_2    Invasin/intimin_cell_adhesion   
Domain families : Pfam (Sanger)Big_2 (PF02368)   
Domain families : Pfam (NCBI)pfam02368   
Domain families : Smart (EMBL)BID_2 (SM00635)  
Conserved Domain (NCBI)NUP210
DMDM Disease mutations23225
Blocks (Seattle)NUP210
SuperfamilyQ8TEM1
Human Protein AtlasENSG00000132182
Peptide AtlasQ8TEM1
HPRD06368
IPIIPI00291755   IPI00871723   
Protein Interaction databases
DIP (DOE-UCLA)Q8TEM1
IntAct (EBI)Q8TEM1
FunCoupENSG00000132182
BioGRIDNUP210
STRING (EMBL)NUP210
ZODIACNUP210
Ontologies - Pathways
QuickGOQ8TEM1
Ontology : AmiGOnuclear envelope  nuclear pore  endoplasmic reticulum membrane  mRNA export from nucleus  tRNA export from nucleus  mitotic nuclear envelope disassembly  regulation of glucose transport  membrane  integral component of membrane  viral process  protein sumoylation  viral transcription  gene silencing by RNA  nuclear membrane  protein dimerization activity  intracellular transport of virus  regulation of cellular response to heat  
Ontology : EGO-EBInuclear envelope  nuclear pore  endoplasmic reticulum membrane  mRNA export from nucleus  tRNA export from nucleus  mitotic nuclear envelope disassembly  regulation of glucose transport  membrane  integral component of membrane  viral process  protein sumoylation  viral transcription  gene silencing by RNA  nuclear membrane  protein dimerization activity  intracellular transport of virus  regulation of cellular response to heat  
Pathways : BIOCARTAMechanism of Protein Import into the Nucleus [Genes]   
Pathways : KEGGRNA transport   
NDEx NetworkNUP210
Atlas of Cancer Signalling NetworkNUP210
Wikipedia pathwaysNUP210
Orthology - Evolution
OrthoDB23225
GeneTree (enSembl)ENSG00000132182
Phylogenetic Trees/Animal Genes : TreeFamNUP210
HOVERGENQ8TEM1
HOGENOMQ8TEM1
Homologs : HomoloGeneNUP210
Homology/Alignments : Family Browser (UCSC)NUP210
Gene fusions - Rearrangements
Fusion : MitelmanNUP210/FBLN2 [3p25.1/3p25.1]  
Fusion: TCGANUP210 3p25.1 FBLN2 3p25.1 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUP210 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NUP210
dbVarNUP210
ClinVarNUP210
1000_GenomesNUP210 
Exome Variant ServerNUP210
ExAC (Exome Aggregation Consortium)NUP210 (select the gene name)
Genetic variants : HAPMAP23225
Genomic Variants (DGV)NUP210 [DGVbeta]
DECIPHERNUP210 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNUP210 
Mutations
ICGC Data PortalNUP210 
TCGA Data PortalNUP210 
Broad Tumor PortalNUP210
OASIS PortalNUP210 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNUP210  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNUP210
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NUP210
DgiDB (Drug Gene Interaction Database)NUP210
DoCM (Curated mutations)NUP210 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NUP210 (select a term)
intoGenNUP210
Cancer3DNUP210(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607703   
Orphanet
MedgenNUP210
Genetic Testing Registry NUP210
NextProtQ8TEM1 [Medical]
TSGene23225
GENETestsNUP210
Target ValidationNUP210
Huge Navigator NUP210 [HugePedia]
snp3D : Map Gene to Disease23225
BioCentury BCIQNUP210
ClinGenNUP210
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23225
Chemical/Pharm GKB GenePA128394614
Clinical trialNUP210
Miscellaneous
canSAR (ICR)NUP210 (select the gene name)
Probes
Litterature
PubMed44 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNUP210
EVEXNUP210
GoPubMedNUP210
iHOPNUP210
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:02:08 CEST 2017

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