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NUP210L (nucleoporin 210kDa like)

Identity

Alias_namesnucleoporin 210kDa like
Other alias-
HGNC (Hugo) NUP210L
LocusID (NCBI) 91181
Atlas_Id 53761
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 153965168 and ends at 154127592 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ANXA9 (1q21.3) / NUP210L (1q21.3)DENND4B (1q21.3) / NUP210L (1q21.3)GATAD2B (1q21.3) / NUP210L (1q21.3)
MED9 (17p11.2) / NUP210L (1q21.3)RORA (15q22.2) / NUP210L (1q21.3)GATAD2B 1q21.3 / NUP210L 1q21.3
RORA 15q22.2 / NUP210L 1q21.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NUP210L   29915
Cards
Entrez_Gene (NCBI)NUP210L  91181  nucleoporin 210kDa like
Aliases
GeneCards (Weizmann)NUP210L
Ensembl hg19 (Hinxton)ENSG00000143552 [Gene_View]  chr1:153965168-154127592 [Contig_View]  NUP210L [Vega]
Ensembl hg38 (Hinxton)ENSG00000143552 [Gene_View]  chr1:153965168-154127592 [Contig_View]  NUP210L [Vega]
ICGC DataPortalENSG00000143552
TCGA cBioPortalNUP210L
AceView (NCBI)NUP210L
Genatlas (Paris)NUP210L
WikiGenes91181
SOURCE (Princeton)NUP210L
Genetics Home Reference (NIH)NUP210L
Genomic and cartography
GoldenPath hg19 (UCSC)NUP210L  -     chr1:153965168-154127592 -  1q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NUP210L  -     1q21.3   [Description]    (hg38-Dec_2013)
EnsemblNUP210L - 1q21.3 [CytoView hg19]  NUP210L - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBINUP210L [Mapview hg19]  NUP210L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK125924 AK128000 AK128108 AL133633 AL833964
RefSeq transcript (Entrez)NM_001159484 NM_207308
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)NUP210L
Cluster EST : UnigeneHs.67639 [ NCBI ]
CGAP (NCI)Hs.67639
Alternative Splicing GalleryENSG00000143552
Gene ExpressionNUP210L [ NCBI-GEO ]   NUP210L [ EBI - ARRAY_EXPRESS ]   NUP210L [ SEEK ]   NUP210L [ MEM ]
Gene Expression Viewer (FireBrowse)NUP210L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91181
GTEX Portal (Tissue expression)NUP210L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VU65   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VU65  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VU65
Splice isoforms : SwissVarQ5VU65
PhosPhoSitePlusQ5VU65
Domains : Interpro (EBI)Big_2    Invasin/intimin_cell_adhesion   
Domain families : Pfam (Sanger)Big_2 (PF02368)   
Domain families : Pfam (NCBI)pfam02368   
Domain families : Smart (EMBL)BID_2 (SM00635)  
Conserved Domain (NCBI)NUP210L
DMDM Disease mutations91181
Blocks (Seattle)NUP210L
SuperfamilyQ5VU65
Human Protein AtlasENSG00000143552
Peptide AtlasQ5VU65
HPRD14852
IPIIPI00410401   IPI00004299   
Protein Interaction databases
DIP (DOE-UCLA)Q5VU65
IntAct (EBI)Q5VU65
FunCoupENSG00000143552
BioGRIDNUP210L
STRING (EMBL)NUP210L
ZODIACNUP210L
Ontologies - Pathways
QuickGOQ5VU65
Ontology : AmiGOnuclear pore  spermatid development  integral component of membrane  Sertoli cell development  
Ontology : EGO-EBInuclear pore  spermatid development  integral component of membrane  Sertoli cell development  
Pathways : KEGGRNA transport   
NDEx NetworkNUP210L
Atlas of Cancer Signalling NetworkNUP210L
Wikipedia pathwaysNUP210L
Orthology - Evolution
OrthoDB91181
GeneTree (enSembl)ENSG00000143552
Phylogenetic Trees/Animal Genes : TreeFamNUP210L
HOVERGENQ5VU65
HOGENOMQ5VU65
Homologs : HomoloGeneNUP210L
Homology/Alignments : Family Browser (UCSC)NUP210L
Gene fusions - Rearrangements
Fusion : MitelmanGATAD2B/NUP210L [1q21.3/1q21.3]  [t(1;1)(q21;q21)]  
Fusion : MitelmanRORA/NUP210L [15q22.2/1q21.3]  [t(1;15)(q21;q22)]  
Fusion: TCGAGATAD2B 1q21.3 NUP210L 1q21.3 BRCA LUAD OV
Fusion: TCGARORA 15q22.2 NUP210L 1q21.3 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUP210L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NUP210L
dbVarNUP210L
ClinVarNUP210L
1000_GenomesNUP210L 
Exome Variant ServerNUP210L
ExAC (Exome Aggregation Consortium)NUP210L (select the gene name)
Genetic variants : HAPMAP91181
Genomic Variants (DGV)NUP210L [DGVbeta]
DECIPHER (Syndromes)1:153965168-154127592  ENSG00000143552
CONAN: Copy Number AnalysisNUP210L 
Mutations
ICGC Data PortalNUP210L 
TCGA Data PortalNUP210L 
Broad Tumor PortalNUP210L
OASIS PortalNUP210L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNUP210L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNUP210L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NUP210L
DgiDB (Drug Gene Interaction Database)NUP210L
DoCM (Curated mutations)NUP210L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NUP210L (select a term)
intoGenNUP210L
Cancer3DNUP210L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNUP210L
Genetic Testing Registry NUP210L
NextProtQ5VU65 [Medical]
TSGene91181
GENETestsNUP210L
Huge Navigator NUP210L [HugePedia]
snp3D : Map Gene to Disease91181
BioCentury BCIQNUP210L
ClinGenNUP210L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91181
Chemical/Pharm GKB GenePA134984604
Clinical trialNUP210L
Miscellaneous
canSAR (ICR)NUP210L (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNUP210L
EVEXNUP210L
GoPubMedNUP210L
iHOPNUP210L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:12:54 CEST 2017

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