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NUP35 (nucleoporin 35)

Identity

Alias_namesnucleoporin 35kDa
Alias_symbol (synonym)MP44
Other aliasMP-44
NP44
NUP53
HGNC (Hugo) NUP35
LocusID (NCBI) 129401
Atlas_Id 71042
Location 2q32.1  [Link to chromosome band 2q32]
Location_base_pair Starts at 183117490 and ends at 183161684 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GULP1 (2q32.1) / NUP35 (2q32.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA4Strojg

 


External links

Nomenclature
HGNC (Hugo)NUP35   29797
Cards
Entrez_Gene (NCBI)NUP35  129401  nucleoporin 35
AliasesMP-44; MP44; NP44; NUP53
GeneCards (Weizmann)NUP35
Ensembl hg19 (Hinxton)ENSG00000163002 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163002 [Gene_View]  chr2:183117490-183161684 [Contig_View]  NUP35 [Vega]
ICGC DataPortalENSG00000163002
TCGA cBioPortalNUP35
AceView (NCBI)NUP35
Genatlas (Paris)NUP35
WikiGenes129401
SOURCE (Princeton)NUP35
Genetics Home Reference (NIH)NUP35
Genomic and cartography
GoldenPath hg38 (UCSC)NUP35&ncsp;- "nbsp;   chr2:183117490-183161684 +  2q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NUP35  -     2q32.1   [Description]    (hg19-Feb_2009)
EnsemblNUP35 - 2q32.1 [CytoView hg19]  NUP35 - 2q32.1 [CytoView hg38]
Mapping of homologs : NCBINUP35 [Mapview hg19]  NUP35 [Mapview hg38]
OMIM608140   
Gene and transcription
Genbank (Entrez)AF411516 AF514993 AK289601 AK290760 AK298199
RefSeq transcript (Entrez)NM_001008544 NM_001287584 NM_001287585 NM_138285
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NUP35
Cluster EST : UnigeneHs.180591 [ NCBI ]
CGAP (NCI)Hs.180591
Alternative Splicing GalleryENSG00000163002
Gene ExpressionNUP35 [ NCBI-GEO ]   NUP35 [ EBI - ARRAY_EXPRESS ]   NUP35 [ SEEK ]   NUP35 [ MEM ]
Gene Expression Viewer (FireBrowse)NUP35 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)129401
GTEX Portal (Tissue expression)NUP35
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NFH5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NFH5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NFH5
Splice isoforms : SwissVarQ8NFH5
PhosPhoSitePlusQ8NFH5
Domaine pattern : Prosite (Expaxy)RRM_NUP35 (PS51472)   
Domains : Interpro (EBI)Nucleoporin_NUP53    RRM_dom    RRM_NUP35_dom   
Domain families : Pfam (Sanger)Nup35_RRM (PF05172)   
Domain families : Pfam (NCBI)pfam05172   
Conserved Domain (NCBI)NUP35
DMDM Disease mutations129401
Blocks (Seattle)NUP35
PDB (SRS)4LIR   
PDB (PDBSum)4LIR   
PDB (IMB)4LIR   
PDB (RSDB)4LIR   
Structural Biology KnowledgeBase4LIR   
SCOP (Structural Classification of Proteins)4LIR   
CATH (Classification of proteins structures)4LIR   
SuperfamilyQ8NFH5
Human Protein AtlasENSG00000163002
Peptide AtlasQ8NFH5
HPRD10486
IPIIPI00329650   IPI01014856   IPI00916892   IPI00550291   IPI00927316   IPI00927087   IPI00927742   IPI00927491   
Protein Interaction databases
DIP (DOE-UCLA)Q8NFH5
IntAct (EBI)Q8NFH5
FunCoupENSG00000163002
BioGRIDNUP35
STRING (EMBL)NUP35
ZODIACNUP35
Ontologies - Pathways
QuickGOQ8NFH5
Ontology : AmiGOsingle-stranded DNA binding  nucleocytoplasmic transporter activity  protein binding  phospholipid binding  nuclear envelope  nuclear lamina  nucleoplasm  plasma membrane  regulation of transcription, DNA-templated  mRNA export from nucleus  tRNA export from nucleus  NLS-bearing protein import into nucleus  nuclear pore organization  mitotic nuclear envelope disassembly  regulation of glucose transport  viral process  protein sumoylation  viral transcription  gene silencing by RNA  nuclear membrane  nuclear pore central transport channel  nuclear pore nuclear basket  intracellular transport of virus  regulation of cellular response to heat  
Ontology : EGO-EBIsingle-stranded DNA binding  nucleocytoplasmic transporter activity  protein binding  phospholipid binding  nuclear envelope  nuclear lamina  nucleoplasm  plasma membrane  regulation of transcription, DNA-templated  mRNA export from nucleus  tRNA export from nucleus  NLS-bearing protein import into nucleus  nuclear pore organization  mitotic nuclear envelope disassembly  regulation of glucose transport  viral process  protein sumoylation  viral transcription  gene silencing by RNA  nuclear membrane  nuclear pore central transport channel  nuclear pore nuclear basket  intracellular transport of virus  regulation of cellular response to heat  
Pathways : KEGGRNA transport   
NDEx NetworkNUP35
Atlas of Cancer Signalling NetworkNUP35
Wikipedia pathwaysNUP35
Orthology - Evolution
OrthoDB129401
GeneTree (enSembl)ENSG00000163002
Phylogenetic Trees/Animal Genes : TreeFamNUP35
HOVERGENQ8NFH5
HOGENOMQ8NFH5
Homologs : HomoloGeneNUP35
Homology/Alignments : Family Browser (UCSC)NUP35
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUP35 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NUP35
dbVarNUP35
ClinVarNUP35
1000_GenomesNUP35 
Exome Variant ServerNUP35
ExAC (Exome Aggregation Consortium)NUP35 (select the gene name)
Genetic variants : HAPMAP129401
Genomic Variants (DGV)NUP35 [DGVbeta]
DECIPHERNUP35 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNUP35 
Mutations
ICGC Data PortalNUP35 
TCGA Data PortalNUP35 
Broad Tumor PortalNUP35
OASIS PortalNUP35 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNUP35  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNUP35
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NUP35
DgiDB (Drug Gene Interaction Database)NUP35
DoCM (Curated mutations)NUP35 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NUP35 (select a term)
intoGenNUP35
Cancer3DNUP35(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608140   
Orphanet
MedgenNUP35
Genetic Testing Registry NUP35
NextProtQ8NFH5 [Medical]
TSGene129401
GENETestsNUP35
Target ValidationNUP35
Huge Navigator NUP35 [HugePedia]
snp3D : Map Gene to Disease129401
BioCentury BCIQNUP35
ClinGenNUP35
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD129401
Chemical/Pharm GKB GenePA134861481
Clinical trialNUP35
Miscellaneous
canSAR (ICR)NUP35 (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNUP35
EVEXNUP35
GoPubMedNUP35
iHOPNUP35
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Sep 18 13:32:28 CEST 2017

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