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NUP37 (nucleoporin 37kDa)

Identity

Alias_namesnucleoporin 37kDa
Alias_symbol (synonym)MGC5585
FLJ22618
Other aliasp37
HGNC (Hugo) NUP37
LocusID (NCBI) 79023
Atlas_Id 71043
Location 12q23.2  [Link to chromosome band 12q23]
Location_base_pair Starts at 102467973 and ends at 102512361 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FGD6 (12q22) / NUP37 (12q23.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NUP37   29929
Cards
Entrez_Gene (NCBI)NUP37  79023  nucleoporin 37kDa
Aliasesp37
GeneCards (Weizmann)NUP37
Ensembl hg19 (Hinxton)ENSG00000075188 [Gene_View]  chr12:102467973-102512361 [Contig_View]  NUP37 [Vega]
Ensembl hg38 (Hinxton)ENSG00000075188 [Gene_View]  chr12:102467973-102512361 [Contig_View]  NUP37 [Vega]
ICGC DataPortalENSG00000075188
TCGA cBioPortalNUP37
AceView (NCBI)NUP37
Genatlas (Paris)NUP37
WikiGenes79023
SOURCE (Princeton)NUP37
Genetics Home Reference (NIH)NUP37
Genomic and cartography
GoldenPath hg19 (UCSC)NUP37  -     chr12:102467973-102512361 -  12q23.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NUP37  -     12q23.2   [Description]    (hg38-Dec_2013)
EnsemblNUP37 - 12q23.2 [CytoView hg19]  NUP37 - 12q23.2 [CytoView hg38]
Mapping of homologs : NCBINUP37 [Mapview hg19]  NUP37 [Mapview hg38]
OMIM609264   
Gene and transcription
Genbank (Entrez)AF514994 AK026271 AK296733 AK310619 BC000861
RefSeq transcript (Entrez)NM_024057
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)NUP37
Cluster EST : UnigeneHs.444276 [ NCBI ]
CGAP (NCI)Hs.444276
Alternative Splicing GalleryENSG00000075188
Gene ExpressionNUP37 [ NCBI-GEO ]   NUP37 [ EBI - ARRAY_EXPRESS ]   NUP37 [ SEEK ]   NUP37 [ MEM ]
Gene Expression Viewer (FireBrowse)NUP37 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79023
GTEX Portal (Tissue expression)NUP37
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NFH4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NFH4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NFH4
Splice isoforms : SwissVarQ8NFH4
PhosPhoSitePlusQ8NFH4
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)NUP37
DMDM Disease mutations79023
Blocks (Seattle)NUP37
SuperfamilyQ8NFH4
Human Protein AtlasENSG00000075188
Peptide AtlasQ8NFH4
HPRD14853
IPIIPI00171665   IPI01021768   IPI01020843   IPI01022119   
Protein Interaction databases
DIP (DOE-UCLA)Q8NFH4
IntAct (EBI)Q8NFH4
FunCoupENSG00000075188
BioGRIDNUP37
STRING (EMBL)NUP37
ZODIACNUP37
Ontologies - Pathways
QuickGOQ8NFH4
Ontology : AmiGOmitotic cell cycle  kinetochore  condensed chromosome kinetochore  protein binding  nucleus  nuclear envelope  nucleoplasm  cytosol  carbohydrate metabolic process  chromosome segregation  mitotic nuclear division  mitotic nuclear envelope disassembly  small GTPase mediated signal transduction  hexose transport  gene expression  regulation of glucose transport  protein transport  glucose transport  viral process  protein sumoylation  viral life cycle  viral transcription  cytokine-mediated signaling pathway  nuclear pore outer ring  nuclear pore outer ring  cellular response to heat  post-translational protein modification  cellular protein metabolic process  small molecule metabolic process  mRNA transport  cell division  transmembrane transport  regulation of cellular response to heat  
Ontology : EGO-EBImitotic cell cycle  kinetochore  condensed chromosome kinetochore  protein binding  nucleus  nuclear envelope  nucleoplasm  cytosol  carbohydrate metabolic process  chromosome segregation  mitotic nuclear division  mitotic nuclear envelope disassembly  small GTPase mediated signal transduction  hexose transport  gene expression  regulation of glucose transport  protein transport  glucose transport  viral process  protein sumoylation  viral life cycle  viral transcription  cytokine-mediated signaling pathway  nuclear pore outer ring  nuclear pore outer ring  cellular response to heat  post-translational protein modification  cellular protein metabolic process  small molecule metabolic process  mRNA transport  cell division  transmembrane transport  regulation of cellular response to heat  
Pathways : KEGGRNA transport   
NDEx NetworkNUP37
Atlas of Cancer Signalling NetworkNUP37
Wikipedia pathwaysNUP37
Orthology - Evolution
OrthoDB79023
GeneTree (enSembl)ENSG00000075188
Phylogenetic Trees/Animal Genes : TreeFamNUP37
HOVERGENQ8NFH4
HOGENOMQ8NFH4
Homologs : HomoloGeneNUP37
Homology/Alignments : Family Browser (UCSC)NUP37
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUP37 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NUP37
dbVarNUP37
ClinVarNUP37
1000_GenomesNUP37 
Exome Variant ServerNUP37
ExAC (Exome Aggregation Consortium)NUP37 (select the gene name)
Genetic variants : HAPMAP79023
Genomic Variants (DGV)NUP37 [DGVbeta]
DECIPHER (Syndromes)12:102467973-102512361  ENSG00000075188
CONAN: Copy Number AnalysisNUP37 
Mutations
ICGC Data PortalNUP37 
TCGA Data PortalNUP37 
Broad Tumor PortalNUP37
OASIS PortalNUP37 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNUP37  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNUP37
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NUP37
DgiDB (Drug Gene Interaction Database)NUP37
DoCM (Curated mutations)NUP37 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NUP37 (select a term)
intoGenNUP37
Cancer3DNUP37(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609264   
Orphanet
MedgenNUP37
Genetic Testing Registry NUP37
NextProtQ8NFH4 [Medical]
TSGene79023
GENETestsNUP37
Huge Navigator NUP37 [HugePedia]
snp3D : Map Gene to Disease79023
BioCentury BCIQNUP37
ClinGenNUP37
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79023
Chemical/Pharm GKB GenePA134948997
Clinical trialNUP37
Miscellaneous
canSAR (ICR)NUP37 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNUP37
EVEXNUP37
GoPubMedNUP37
iHOPNUP37
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:35:37 CET 2017

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