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NUP58 (nucleoporin 58kDa)

Identity

Alias_namesNUPL1
nucleoporin like 1
nucleoporin 58kDa
Alias_symbol (synonym)KIAA0410
NUP45
Other aliasPRO2463
HGNC (Hugo) NUP58
LocusID (NCBI) 9818
Atlas_Id 77729
Location 13q12.13  [Link to chromosome band 13q12]
Location_base_pair Starts at 25875666 and ends at 25916561 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MALAT1 (11q13.1) / NUP58 (13q12.13)NUP58 (13q12.13) / CCDC169 (13q13.3)NUP58 (13q12.13) / NUP58 (13q12.13)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)NUP58   20261
Cards
Entrez_Gene (NCBI)NUP58  9818  nucleoporin 58kDa
AliasesNUPL1; PRO2463
GeneCards (Weizmann)NUP58
Ensembl hg19 (Hinxton)ENSG00000139496 [Gene_View]  chr13:25875666-25916561 [Contig_View]  NUP58 [Vega]
Ensembl hg38 (Hinxton)ENSG00000139496 [Gene_View]  chr13:25875666-25916561 [Contig_View]  NUP58 [Vega]
ICGC DataPortalENSG00000139496
TCGA cBioPortalNUP58
AceView (NCBI)NUP58
Genatlas (Paris)NUP58
WikiGenes9818
SOURCE (Princeton)NUP58
Genetics Home Reference (NIH)NUP58
Genomic and cartography
GoldenPath hg19 (UCSC)NUP58  -     chr13:25875666-25916561 +  13q12.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NUP58  -     13q12.13   [Description]    (hg38-Dec_2013)
EnsemblNUP58 - 13q12.13 [CytoView hg19]  NUP58 - 13q12.13 [CytoView hg38]
Mapping of homologs : NCBINUP58 [Mapview hg19]  NUP58 [Mapview hg38]
OMIM607615   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001008564 NM_001008565 NM_014089
RefSeq genomic (Entrez)NC_000013 NC_018924 NG_033956 NT_024524 NW_004929388
Consensus coding sequences : CCDS (NCBI)NUP58
Cluster EST : UnigeneHs.732064 [ NCBI ]
CGAP (NCI)Hs.732064
Alternative Splicing GalleryENSG00000139496
Gene ExpressionNUP58 [ NCBI-GEO ]   NUP58 [ EBI - ARRAY_EXPRESS ]   NUP58 [ SEEK ]   NUP58 [ MEM ]
Gene Expression Viewer (FireBrowse)NUP58 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)9818
GTEX Portal (Tissue expression)NUP58
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NUP58
DMDM Disease mutations9818
Blocks (Seattle)NUP58
Human Protein AtlasENSG00000139496
HPRD06355
IPIIPI00107122   IPI00938163   IPI01010970   IPI00910174   IPI00156037   IPI00550771   IPI01018863   IPI00946361   IPI00946034   
Protein Interaction databases
FunCoupENSG00000139496
BioGRIDNUP58
STRING (EMBL)NUP58
ZODIACNUP58
Ontologies - Pathways
Huge Navigator NUP58 [HugePedia]
snp3D : Map Gene to Disease9818
BioCentury BCIQNUP58
ClinGenNUP58
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9818
Chemical/Pharm GKB GenePA134981903
Clinical trialNUP58
Miscellaneous
canSAR (ICR)NUP58 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNUP58
EVEXNUP58
GoPubMedNUP58
iHOPNUP58
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:35:38 CET 2017

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