Atlas of Genetics and Cytogenetics in Oncology and Haematology


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NUP62 (nucleoporin 62kDa)

Identity

Alias_namesnucleoporin 62kDa
Alias_symbol (synonym)p62
DKFZp547L134
IBSN
SNDI
MGC841
FLJ20822
FLJ43869
Other alias
HGNC (Hugo) NUP62
LocusID (NCBI) 23636
Atlas_Id 55780
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 50410084 and ends at 50432799 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NUP62   8066
Cards
Entrez_Gene (NCBI)NUP62  23636  nucleoporin 62kDa
AliasesIBSN; SNDI; p62
GeneCards (Weizmann)NUP62
Ensembl hg19 (Hinxton)ENSG00000213024 [Gene_View]  chr19:50410084-50432799 [Contig_View]  NUP62 [Vega]
Ensembl hg38 (Hinxton)ENSG00000213024 [Gene_View]  chr19:50410084-50432799 [Contig_View]  NUP62 [Vega]
ICGC DataPortalENSG00000213024
TCGA cBioPortalNUP62
AceView (NCBI)NUP62
Genatlas (Paris)NUP62
WikiGenes23636
SOURCE (Princeton)NUP62
Genetics Home Reference (NIH)NUP62
Genomic and cartography
GoldenPath hg19 (UCSC)NUP62  -     chr19:50410084-50432799 -  19q13.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NUP62  -     19q13.33   [Description]    (hg38-Dec_2013)
EnsemblNUP62 - 19q13.33 [CytoView hg19]  NUP62 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBINUP62 [Mapview hg19]  NUP62 [Mapview hg38]
OMIM271930   605815   
Gene and transcription
Genbank (Entrez)AF318357 AK000829 AK125857 AK225817 AL162061
RefSeq transcript (Entrez)NM_001193357 NM_012346 NM_016553 NM_153718 NM_153719
RefSeq genomic (Entrez)NC_000019 NC_018930 NG_021170 NG_023448 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)NUP62
Cluster EST : UnigeneHs.574492 [ NCBI ]
CGAP (NCI)Hs.574492
Alternative Splicing GalleryENSG00000213024
Gene ExpressionNUP62 [ NCBI-GEO ]   NUP62 [ EBI - ARRAY_EXPRESS ]   NUP62 [ SEEK ]   NUP62 [ MEM ]
Gene Expression Viewer (FireBrowse)NUP62 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23636
GTEX Portal (Tissue expression)NUP62
Protein : pattern, domain, 3D structure
UniProt/SwissProtP37198   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP37198  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP37198
Splice isoforms : SwissVarP37198
PhosPhoSitePlusP37198
Domains : Interpro (EBI)NSP1/NUP62    Nucleoporin_NSP1_C   
Domain families : Pfam (Sanger)Nsp1_C (PF05064)   
Domain families : Pfam (NCBI)pfam05064   
Conserved Domain (NCBI)NUP62
DMDM Disease mutations23636
Blocks (Seattle)NUP62
PDB (SRS)2H4D   
PDB (PDBSum)2H4D   
PDB (IMB)2H4D   
PDB (RSDB)2H4D   
Structural Biology KnowledgeBase2H4D   
SCOP (Structural Classification of Proteins)2H4D   
CATH (Classification of proteins structures)2H4D   
SuperfamilyP37198
Human Protein AtlasENSG00000213024
Peptide AtlasP37198
HPRD05782
IPIIPI00293533   IPI01015531   
Protein Interaction databases
DIP (DOE-UCLA)P37198
IntAct (EBI)P37198
FunCoupENSG00000213024
BioGRIDNUP62
STRING (EMBL)NUP62
ZODIACNUP62
Ontologies - Pathways
QuickGOP37198
Ontology : AmiGOspindle pole  chromatin binding  nucleocytoplasmic transporter activity  nucleocytoplasmic transporter activity  protein binding  phospholipid binding  nuclear envelope  nuclear envelope  annulate lamellae  nuclear pore  nuclear pore  cytoplasm  transcription, DNA-templated  transcription, DNA-templated  RNA export from nucleus  mRNA export from nucleus  tRNA export from nucleus  protein import into nucleus  mitotic nuclear division  mitotic nuclear envelope disassembly  cell surface receptor signaling pathway  cell surface receptor signaling pathway  cell surface receptor signaling pathway  spermatogenesis  cell aging  cell death  cell death  negative regulation of cell proliferation  negative regulation of cell proliferation  hormone-mediated signaling pathway  regulation of signal transduction  regulation of glucose transport  viral process  protein sumoylation  structural constituent of nuclear pore  viral transcription  kinesin binding  receptor signaling complex scaffold activity  receptor signaling complex scaffold activity  intracellular ribonucleoprotein complex  Hsp70 protein binding  gene silencing by RNA  nucleocytoplasmic shuttling complex  nuclear membrane  negative regulation of epidermal growth factor receptor signaling pathway  SH2 domain binding  SH2 domain binding  regulation of protein import into nucleus  negative regulation of apoptotic process  negative regulation of apoptotic process  negative regulation of programmed cell death  negative regulation of programmed cell death  positive regulation of I-kappaB kinase/NF-kappaB signaling  positive regulation of I-kappaB kinase/NF-kappaB signaling  ubiquitin binding  ubiquitin binding  intracellular membrane-bounded organelle  negative regulation of MAP kinase activity  nuclear pore central transport channel  positive regulation of epidermal growth factor receptor signaling pathway  positive regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  regulation of Ras protein signal transduction  negative regulation of Ras protein signal transduction  pore complex  thyroid hormone receptor binding  thyroid hormone receptor binding  PTB domain binding  Hsp90 protein binding  protein heterotrimerization  ribonucleoprotein complex export from nucleus  intracellular transport of virus  Flemming body  regulation of cellular response to heat  
Ontology : EGO-EBIspindle pole  chromatin binding  nucleocytoplasmic transporter activity  nucleocytoplasmic transporter activity  protein binding  phospholipid binding  nuclear envelope  nuclear envelope  annulate lamellae  nuclear pore  nuclear pore  cytoplasm  transcription, DNA-templated  transcription, DNA-templated  RNA export from nucleus  mRNA export from nucleus  tRNA export from nucleus  protein import into nucleus  mitotic nuclear division  mitotic nuclear envelope disassembly  cell surface receptor signaling pathway  cell surface receptor signaling pathway  cell surface receptor signaling pathway  spermatogenesis  cell aging  cell death  cell death  negative regulation of cell proliferation  negative regulation of cell proliferation  hormone-mediated signaling pathway  regulation of signal transduction  regulation of glucose transport  viral process  protein sumoylation  structural constituent of nuclear pore  viral transcription  kinesin binding  receptor signaling complex scaffold activity  receptor signaling complex scaffold activity  intracellular ribonucleoprotein complex  Hsp70 protein binding  gene silencing by RNA  nucleocytoplasmic shuttling complex  nuclear membrane  negative regulation of epidermal growth factor receptor signaling pathway  SH2 domain binding  SH2 domain binding  regulation of protein import into nucleus  negative regulation of apoptotic process  negative regulation of apoptotic process  negative regulation of programmed cell death  negative regulation of programmed cell death  positive regulation of I-kappaB kinase/NF-kappaB signaling  positive regulation of I-kappaB kinase/NF-kappaB signaling  ubiquitin binding  ubiquitin binding  intracellular membrane-bounded organelle  negative regulation of MAP kinase activity  nuclear pore central transport channel  positive regulation of epidermal growth factor receptor signaling pathway  positive regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  regulation of Ras protein signal transduction  negative regulation of Ras protein signal transduction  pore complex  thyroid hormone receptor binding  thyroid hormone receptor binding  PTB domain binding  Hsp90 protein binding  protein heterotrimerization  ribonucleoprotein complex export from nucleus  intracellular transport of virus  Flemming body  regulation of cellular response to heat  
Pathways : BIOCARTAMechanism of Protein Import into the Nucleus [Genes]   
Pathways : KEGGRNA transport   
NDEx NetworkNUP62
Atlas of Cancer Signalling NetworkNUP62
Wikipedia pathwaysNUP62
Orthology - Evolution
OrthoDB23636
GeneTree (enSembl)ENSG00000213024
Phylogenetic Trees/Animal Genes : TreeFamNUP62
HOVERGENP37198
HOGENOMP37198
Homologs : HomoloGeneNUP62
Homology/Alignments : Family Browser (UCSC)NUP62
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUP62 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NUP62
dbVarNUP62
ClinVarNUP62
1000_GenomesNUP62 
Exome Variant ServerNUP62
ExAC (Exome Aggregation Consortium)NUP62 (select the gene name)
Genetic variants : HAPMAP23636
Genomic Variants (DGV)NUP62 [DGVbeta]
DECIPHER (Syndromes)19:50410084-50432799  ENSG00000213024
CONAN: Copy Number AnalysisNUP62 
Mutations
ICGC Data PortalNUP62 
TCGA Data PortalNUP62 
Broad Tumor PortalNUP62
OASIS PortalNUP62 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNUP62  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNUP62
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch NUP62
DgiDB (Drug Gene Interaction Database)NUP62
DoCM (Curated mutations)NUP62 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NUP62 (select a term)
intoGenNUP62
Cancer3DNUP62(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM271930    605815   
Orphanet18978   
MedgenNUP62
Genetic Testing Registry NUP62
NextProtP37198 [Medical]
TSGene23636
GENETestsNUP62
Huge Navigator NUP62 [HugePedia]
snp3D : Map Gene to Disease23636
BioCentury BCIQNUP62
ClinGenNUP62
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23636
Chemical/Pharm GKB GenePA31854
Clinical trialNUP62
Miscellaneous
canSAR (ICR)NUP62 (select the gene name)
Probes
Litterature
PubMed111 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNUP62
EVEXNUP62
GoPubMedNUP62
iHOPNUP62
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:19:37 CET 2017

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