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NUP62CL (nucleoporin 62 C-terminal like)

Identity

Alias_namesnucleoporin 62kDa C-terminal like
Alias_symbol (synonym)FLJ20130
Other alias-
HGNC (Hugo) NUP62CL
LocusID (NCBI) 54830
Atlas_Id 71048
Location Xq22.3  [Link to chromosome band Xq22]
Location_base_pair Starts at 107123427 and ends at 107206440 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NUP62CL   25960
Cards
Entrez_Gene (NCBI)NUP62CL  54830  nucleoporin 62 C-terminal like
Aliases
GeneCards (Weizmann)NUP62CL
Ensembl hg19 (Hinxton)ENSG00000198088 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198088 [Gene_View]  chrX:107123427-107206440 [Contig_View]  NUP62CL [Vega]
ICGC DataPortalENSG00000198088
TCGA cBioPortalNUP62CL
AceView (NCBI)NUP62CL
Genatlas (Paris)NUP62CL
WikiGenes54830
SOURCE (Princeton)NUP62CL
Genetics Home Reference (NIH)NUP62CL
Genomic and cartography
GoldenPath hg38 (UCSC)NUP62CL  -     chrX:107123427-107206440 -  Xq22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NUP62CL  -     Xq22.3   [Description]    (hg19-Feb_2009)
EnsemblNUP62CL - Xq22.3 [CytoView hg19]  NUP62CL - Xq22.3 [CytoView hg38]
Mapping of homologs : NCBINUP62CL [Mapview hg19]  NUP62CL [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI702317 AK000137 BC016327 BC017799 BF805909
RefSeq transcript (Entrez)NM_017681
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NUP62CL
Cluster EST : UnigeneHs.163629 [ NCBI ]
CGAP (NCI)Hs.163629
Alternative Splicing GalleryENSG00000198088
Gene ExpressionNUP62CL [ NCBI-GEO ]   NUP62CL [ EBI - ARRAY_EXPRESS ]   NUP62CL [ SEEK ]   NUP62CL [ MEM ]
Gene Expression Viewer (FireBrowse)NUP62CL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54830
GTEX Portal (Tissue expression)NUP62CL
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H1M0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H1M0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H1M0
Splice isoforms : SwissVarQ9H1M0
PhosPhoSitePlusQ9H1M0
Domains : Interpro (EBI)NSP1/NUP62    Nucleoporin_NSP1_C   
Domain families : Pfam (Sanger)Nsp1_C (PF05064)   
Domain families : Pfam (NCBI)pfam05064   
Conserved Domain (NCBI)NUP62CL
DMDM Disease mutations54830
Blocks (Seattle)NUP62CL
SuperfamilyQ9H1M0
Human Protein AtlasENSG00000198088
Peptide AtlasQ9H1M0
HPRD06527
IPIIPI00300542   IPI00383015   IPI00553162   IPI00644100   
Protein Interaction databases
DIP (DOE-UCLA)Q9H1M0
IntAct (EBI)Q9H1M0
FunCoupENSG00000198088
BioGRIDNUP62CL
STRING (EMBL)NUP62CL
ZODIACNUP62CL
Ontologies - Pathways
QuickGOQ9H1M0
Ontology : AmiGOnucleocytoplasmic transporter activity  protein binding  phospholipid binding  RNA export from nucleus  protein import into nucleus  structural constituent of nuclear pore  nuclear pore central transport channel  ribonucleoprotein complex export from nucleus  
Ontology : EGO-EBInucleocytoplasmic transporter activity  protein binding  phospholipid binding  RNA export from nucleus  protein import into nucleus  structural constituent of nuclear pore  nuclear pore central transport channel  ribonucleoprotein complex export from nucleus  
NDEx NetworkNUP62CL
Atlas of Cancer Signalling NetworkNUP62CL
Wikipedia pathwaysNUP62CL
Orthology - Evolution
OrthoDB54830
GeneTree (enSembl)ENSG00000198088
Phylogenetic Trees/Animal Genes : TreeFamNUP62CL
HOVERGENQ9H1M0
HOGENOMQ9H1M0
Homologs : HomoloGeneNUP62CL
Homology/Alignments : Family Browser (UCSC)NUP62CL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUP62CL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NUP62CL
dbVarNUP62CL
ClinVarNUP62CL
1000_GenomesNUP62CL 
Exome Variant ServerNUP62CL
ExAC (Exome Aggregation Consortium)NUP62CL (select the gene name)
Genetic variants : HAPMAP54830
Genomic Variants (DGV)NUP62CL [DGVbeta]
DECIPHERNUP62CL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNUP62CL 
Mutations
ICGC Data PortalNUP62CL 
TCGA Data PortalNUP62CL 
Broad Tumor PortalNUP62CL
OASIS PortalNUP62CL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNUP62CL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNUP62CL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch NUP62CL
DgiDB (Drug Gene Interaction Database)NUP62CL
DoCM (Curated mutations)NUP62CL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NUP62CL (select a term)
intoGenNUP62CL
Cancer3DNUP62CL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNUP62CL
Genetic Testing Registry NUP62CL
NextProtQ9H1M0 [Medical]
TSGene54830
GENETestsNUP62CL
Target ValidationNUP62CL
Huge Navigator NUP62CL [HugePedia]
snp3D : Map Gene to Disease54830
BioCentury BCIQNUP62CL
ClinGenNUP62CL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54830
Chemical/Pharm GKB GenePA145148360
Clinical trialNUP62CL
Miscellaneous
canSAR (ICR)NUP62CL (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNUP62CL
EVEXNUP62CL
GoPubMedNUP62CL
iHOPNUP62CL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:33:20 CEST 2017

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