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NUP93 (nucleoporin 93kDa)

Identity

Alias_namesnucleoporin 93kDa
Alias_symbol (synonym)KIAA0095
Other aliasNIC96
NPHS12
HGNC (Hugo) NUP93
LocusID (NCBI) 9688
Atlas_Id 47170
Location 16q13  [Link to chromosome band 16q13]
Location_base_pair Starts at 56815704 and ends at 56878861 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MIR548H3 (6q16.1) / NUP93 (16q13)NUP93 (16q13) / CYB5B (16q22.1)NUP93 (16q13) / GNAO1 (16q12.2)
USP10 (16q24.1) / NUP93 (16q13)NUP93 16q13 / GNAO1 16q12.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NUP93   28958
Cards
Entrez_Gene (NCBI)NUP93  9688  nucleoporin 93kDa
AliasesNIC96; NPHS12
GeneCards (Weizmann)NUP93
Ensembl hg19 (Hinxton)ENSG00000102900 [Gene_View]  chr16:56815704-56878861 [Contig_View]  NUP93 [Vega]
Ensembl hg38 (Hinxton)ENSG00000102900 [Gene_View]  chr16:56815704-56878861 [Contig_View]  NUP93 [Vega]
ICGC DataPortalENSG00000102900
TCGA cBioPortalNUP93
AceView (NCBI)NUP93
Genatlas (Paris)NUP93
WikiGenes9688
SOURCE (Princeton)NUP93
Genetics Home Reference (NIH)NUP93
Genomic and cartography
GoldenPath hg19 (UCSC)NUP93  -     chr16:56815704-56878861 +  16q13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NUP93  -     16q13   [Description]    (hg38-Dec_2013)
EnsemblNUP93 - 16q13 [CytoView hg19]  NUP93 - 16q13 [CytoView hg38]
Mapping of homologs : NCBINUP93 [Mapview hg19]  NUP93 [Mapview hg38]
OMIM614351   
Gene and transcription
Genbank (Entrez)AF086282 AK056637 AK125165 AK292262 AK294176
RefSeq transcript (Entrez)NM_001242795 NM_001242796 NM_014669
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)NUP93
Cluster EST : UnigeneHs.276878 [ NCBI ]
CGAP (NCI)Hs.276878
Alternative Splicing GalleryENSG00000102900
Gene ExpressionNUP93 [ NCBI-GEO ]   NUP93 [ EBI - ARRAY_EXPRESS ]   NUP93 [ SEEK ]   NUP93 [ MEM ]
Gene Expression Viewer (FireBrowse)NUP93 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9688
GTEX Portal (Tissue expression)NUP93
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N1F7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N1F7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N1F7
Splice isoforms : SwissVarQ8N1F7
PhosPhoSitePlusQ8N1F7
Domains : Interpro (EBI)Nucleoporin_int_Nup93/Nic96   
Domain families : Pfam (Sanger)Nic96 (PF04097)   
Domain families : Pfam (NCBI)pfam04097   
Conserved Domain (NCBI)NUP93
DMDM Disease mutations9688
Blocks (Seattle)NUP93
SuperfamilyQ8N1F7
Human Protein AtlasENSG00000102900
Peptide AtlasQ8N1F7
HPRD14854
IPIIPI00397904   IPI00644506   
Protein Interaction databases
DIP (DOE-UCLA)Q8N1F7
IntAct (EBI)Q8N1F7
FunCoupENSG00000102900
BioGRIDNUP93
STRING (EMBL)NUP93
ZODIACNUP93
Ontologies - Pathways
QuickGOQ8N1F7
Ontology : AmiGOpositive regulation of defense response to virus by host  nuclear envelope  nuclear pore  mRNA export from nucleus  tRNA export from nucleus  protein import into nucleus  mitotic nuclear envelope disassembly  regulation of glucose transport  membrane  viral process  protein sumoylation  poly(A)+ mRNA export from nucleus  structural constituent of nuclear pore  viral transcription  gene silencing by RNA  nuclear membrane  nuclear periphery  nuclear pore complex assembly  intracellular transport of virus  mitophagy in response to mitochondrial depolarization  xenophagy  regulation of cellular response to heat  
Ontology : EGO-EBIpositive regulation of defense response to virus by host  nuclear envelope  nuclear pore  mRNA export from nucleus  tRNA export from nucleus  protein import into nucleus  mitotic nuclear envelope disassembly  regulation of glucose transport  membrane  viral process  protein sumoylation  poly(A)+ mRNA export from nucleus  structural constituent of nuclear pore  viral transcription  gene silencing by RNA  nuclear membrane  nuclear periphery  nuclear pore complex assembly  intracellular transport of virus  mitophagy in response to mitochondrial depolarization  xenophagy  regulation of cellular response to heat  
Pathways : KEGGRNA transport   
NDEx NetworkNUP93
Atlas of Cancer Signalling NetworkNUP93
Wikipedia pathwaysNUP93
Orthology - Evolution
OrthoDB9688
GeneTree (enSembl)ENSG00000102900
Phylogenetic Trees/Animal Genes : TreeFamNUP93
HOVERGENQ8N1F7
HOGENOMQ8N1F7
Homologs : HomoloGeneNUP93
Homology/Alignments : Family Browser (UCSC)NUP93
Gene fusions - Rearrangements
Fusion : MitelmanNUP93/GNAO1 [16q13/16q12.2]  
Fusion: TCGANUP93 16q13 GNAO1 16q12.2 LGG
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUP93 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NUP93
dbVarNUP93
ClinVarNUP93
1000_GenomesNUP93 
Exome Variant ServerNUP93
ExAC (Exome Aggregation Consortium)NUP93 (select the gene name)
Genetic variants : HAPMAP9688
Genomic Variants (DGV)NUP93 [DGVbeta]
DECIPHER (Syndromes)16:56815704-56878861  ENSG00000102900
CONAN: Copy Number AnalysisNUP93 
Mutations
ICGC Data PortalNUP93 
TCGA Data PortalNUP93 
Broad Tumor PortalNUP93
OASIS PortalNUP93 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNUP93  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNUP93
intOGen PortalNUP93
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NUP93
DgiDB (Drug Gene Interaction Database)NUP93
DoCM (Curated mutations)NUP93 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NUP93 (select a term)
intoGenNUP93
Cancer3DNUP93(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614351   
Orphanet12194    12191   
MedgenNUP93
Genetic Testing Registry NUP93
NextProtQ8N1F7 [Medical]
TSGene9688
GENETestsNUP93
Huge Navigator NUP93 [HugePedia]
snp3D : Map Gene to Disease9688
BioCentury BCIQNUP93
ClinGenNUP93
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9688
Chemical/Pharm GKB GenePA134912759
Clinical trialNUP93
Miscellaneous
canSAR (ICR)NUP93 (select the gene name)
Probes
Litterature
PubMed55 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNUP93
EVEXNUP93
GoPubMedNUP93
iHOPNUP93
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:19:38 CET 2017

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