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NUPL1 (nucleoporin like 1)

Identity

Other aliasPRO2463
HGNC (Hugo) NUPL1
LocusID (NCBI) 9818
Atlas_Id 71050
Location 13q12.13  [Link to chromosome band 13q12]
Location_base_pair Starts at 25875666 and ends at 25916561 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NUPL1   20261
Cards
Entrez_Gene (NCBI)NUPL1  9818  nucleoporin like 1
AliasesPRO2463
GeneCards (Weizmann)NUPL1
Ensembl hg19 (Hinxton)ENSG00000139496 [Gene_View]  chr13:25875666-25916561 [Contig_View]  NUPL1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000139496 [Gene_View]  chr13:25875666-25916561 [Contig_View]  NUPL1 [Vega]
ICGC DataPortalENSG00000139496
TCGA cBioPortalNUPL1
AceView (NCBI)NUPL1
Genatlas (Paris)NUPL1
WikiGenes9818
SOURCE (Princeton)NUPL1
Genetics Home Reference (NIH)NUPL1
Genomic and cartography
GoldenPath hg19 (UCSC)NUPL1  -     chr13:25875666-25916561 +  13q12.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NUPL1  -     13q12.13   [Description]    (hg38-Dec_2013)
EnsemblNUPL1 - 13q12.13 [CytoView hg19]  NUPL1 - 13q12.13 [CytoView hg38]
Mapping of homologs : NCBINUPL1 [Mapview hg19]  NUPL1 [Mapview hg38]
OMIM607615   
Gene and transcription
Genbank (Entrez)AB007870 AF113020 AK025800 AK026604 AK123955
RefSeq transcript (Entrez)NM_001008564 NM_001008565 NM_014089
RefSeq genomic (Entrez)NC_000013 NC_018924 NG_033956 NT_024524 NW_004929388
Consensus coding sequences : CCDS (NCBI)NUPL1
Cluster EST : UnigeneHs.732064 [ NCBI ]
CGAP (NCI)Hs.732064
Alternative Splicing GalleryENSG00000139496
Gene ExpressionNUPL1 [ NCBI-GEO ]   NUPL1 [ EBI - ARRAY_EXPRESS ]   NUPL1 [ SEEK ]   NUPL1 [ MEM ]
Gene Expression Viewer (FireBrowse)NUPL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9818
GTEX Portal (Tissue expression)NUPL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BVL2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BVL2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BVL2
Splice isoforms : SwissVarQ9BVL2
PhosPhoSitePlusQ9BVL2
Domains : Interpro (EBI)Nucleoporin_p58/p45   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NUPL1
DMDM Disease mutations9818
Blocks (Seattle)NUPL1
PDB (SRS)4JO7    4JO9    4JQ5   
PDB (PDBSum)4JO7    4JO9    4JQ5   
PDB (IMB)4JO7    4JO9    4JQ5   
PDB (RSDB)4JO7    4JO9    4JQ5   
Structural Biology KnowledgeBase4JO7    4JO9    4JQ5   
SCOP (Structural Classification of Proteins)4JO7    4JO9    4JQ5   
CATH (Classification of proteins structures)4JO7    4JO9    4JQ5   
SuperfamilyQ9BVL2
Human Protein AtlasENSG00000139496
Peptide AtlasQ9BVL2
HPRD06355
IPIIPI00107122   IPI00938163   IPI01010970   IPI00910174   IPI00156037   IPI00550771   IPI01018863   IPI00946361   IPI00946034   
Protein Interaction databases
DIP (DOE-UCLA)Q9BVL2
IntAct (EBI)Q9BVL2
FunCoupENSG00000139496
BioGRIDNUPL1
STRING (EMBL)NUPL1
ZODIACNUPL1
Ontologies - Pathways
QuickGOQ9BVL2
Ontology : AmiGOmitotic cell cycle  nucleocytoplasmic transporter activity  protein binding  nuclear envelope  nuclear pore  carbohydrate metabolic process  nucleocytoplasmic transport  mitotic nuclear envelope disassembly  hexose transport  gene expression  regulation of glucose transport  protein transport  glucose transport  viral process  protein sumoylation  viral life cycle  viral transcription  cytokine-mediated signaling pathway  nuclear membrane  cellular response to heat  post-translational protein modification  cellular protein metabolic process  small molecule metabolic process  mRNA transport  transmembrane transport  regulation of cellular response to heat  
Ontology : EGO-EBImitotic cell cycle  nucleocytoplasmic transporter activity  protein binding  nuclear envelope  nuclear pore  carbohydrate metabolic process  nucleocytoplasmic transport  mitotic nuclear envelope disassembly  hexose transport  gene expression  regulation of glucose transport  protein transport  glucose transport  viral process  protein sumoylation  viral life cycle  viral transcription  cytokine-mediated signaling pathway  nuclear membrane  cellular response to heat  post-translational protein modification  cellular protein metabolic process  small molecule metabolic process  mRNA transport  transmembrane transport  regulation of cellular response to heat  
Pathways : KEGGRNA transport   
NDEx NetworkNUPL1
Atlas of Cancer Signalling NetworkNUPL1
Wikipedia pathwaysNUPL1
Orthology - Evolution
OrthoDB9818
GeneTree (enSembl)ENSG00000139496
Phylogenetic Trees/Animal Genes : TreeFamNUPL1
HOVERGENQ9BVL2
HOGENOMQ9BVL2
Homologs : HomoloGeneNUPL1
Homology/Alignments : Family Browser (UCSC)NUPL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUPL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NUPL1
dbVarNUPL1
ClinVarNUPL1
1000_GenomesNUPL1 
Exome Variant ServerNUPL1
ExAC (Exome Aggregation Consortium)NUPL1 (select the gene name)
Genetic variants : HAPMAP9818
Genomic Variants (DGV)NUPL1 [DGVbeta]
DECIPHER (Syndromes)13:25875666-25916561  ENSG00000139496
CONAN: Copy Number AnalysisNUPL1 
Mutations
ICGC Data PortalNUPL1 
TCGA Data PortalNUPL1 
Broad Tumor PortalNUPL1
OASIS PortalNUPL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNUPL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNUPL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NUPL1
DgiDB (Drug Gene Interaction Database)NUPL1
DoCM (Curated mutations)NUPL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NUPL1 (select a term)
intoGenNUPL1
Cancer3DNUPL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607615   
Orphanet
MedgenNUPL1
Genetic Testing Registry NUPL1
NextProtQ9BVL2 [Medical]
TSGene9818
GENETestsNUPL1
Huge Navigator NUPL1 [HugePedia]
snp3D : Map Gene to Disease9818
BioCentury BCIQNUPL1
ClinGenNUPL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9818
Chemical/Pharm GKB GenePA134981903
Clinical trialNUPL1
Miscellaneous
canSAR (ICR)NUPL1 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNUPL1
EVEXNUPL1
GoPubMedNUPL1
iHOPNUPL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:35:38 CET 2017

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