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NUPL2 (nucleoporin like 2)

Identity

Alias_symbol (synonym)NLP_1
CG1
hCG1
H_RG271G13.9
Other aliasNLP-1
HGNC (Hugo) NUPL2
LocusID (NCBI) 11097
Atlas_Id 47390
Location 7p15.3  [Link to chromosome band 7p15]
Location_base_pair Starts at 23181827 and ends at 23201011 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GPNMB (7p15.3) / NUPL2 (7p15.3)NUPL2 (7p15.3) / HMGCS1 (5p12)NUPL2 (7p15.3) / SET (9q34.11)
NUPL2 (7p15.3) / SUN1 (7p22.3)NUPL2 (7p15.3) / TMC8 (17q25.3)PACSIN2 (22q13.2) / NUPL2 (7p15.3)
GPNMB 7p15.3 / NUPL2 7p15.3PACSIN2 22q13.2 / NUPL2 7p15.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NUPL2   17010
Cards
Entrez_Gene (NCBI)NUPL2  11097  nucleoporin like 2
AliasesCG1; NLP-1; NLP_1; hCG1
GeneCards (Weizmann)NUPL2
Ensembl hg19 (Hinxton)ENSG00000136243 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136243 [Gene_View]  chr7:23181827-23201011 [Contig_View]  NUPL2 [Vega]
ICGC DataPortalENSG00000136243
TCGA cBioPortalNUPL2
AceView (NCBI)NUPL2
Genatlas (Paris)NUPL2
WikiGenes11097
SOURCE (Princeton)NUPL2
Genetics Home Reference (NIH)NUPL2
Genomic and cartography
GoldenPath hg38 (UCSC)NUPL2  -     chr7:23181827-23201011 +  7p15.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NUPL2  -     7p15.3   [Description]    (hg19-Feb_2009)
EnsemblNUPL2 - 7p15.3 [CytoView hg19]  NUPL2 - 7p15.3 [CytoView hg38]
Mapping of homologs : NCBINUPL2 [Mapview hg19]  NUPL2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI352214 AK124359 AK298183 AK300113 AK312991
RefSeq transcript (Entrez)NM_007342
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NUPL2
Cluster EST : UnigeneHs.408241 [ NCBI ]
CGAP (NCI)Hs.408241
Alternative Splicing GalleryENSG00000136243
Gene ExpressionNUPL2 [ NCBI-GEO ]   NUPL2 [ EBI - ARRAY_EXPRESS ]   NUPL2 [ SEEK ]   NUPL2 [ MEM ]
Gene Expression Viewer (FireBrowse)NUPL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11097
GTEX Portal (Tissue expression)NUPL2
Human Protein AtlasENSG00000136243-NUPL2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15504   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15504  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15504
Splice isoforms : SwissVarO15504
PhosPhoSitePlusO15504
Domaine pattern : Prosite (Expaxy)ZF_C3H1 (PS50103)   
Domains : Interpro (EBI)Znf_CCCH   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C3H1 (SM00356)  
Conserved Domain (NCBI)NUPL2
DMDM Disease mutations11097
Blocks (Seattle)NUPL2
SuperfamilyO15504
Human Protein Atlas [tissue]ENSG00000136243-NUPL2 [tissue]
Peptide AtlasO15504
HPRD14855
IPIIPI00187080   IPI00010654   IPI00477209   IPI00916170   IPI00915940   IPI00916695   
Protein Interaction databases
DIP (DOE-UCLA)O15504
IntAct (EBI)O15504
FunCoupENSG00000136243
BioGRIDNUPL2
STRING (EMBL)NUPL2
ZODIACNUPL2
Ontologies - Pathways
QuickGOO15504
Ontology : AmiGORNA binding  nuclear export signal receptor activity  protein binding  nucleus  nuclear envelope  nuclear pore  nucleoplasm  cytosol  cytosol  mRNA export from nucleus  tRNA export from nucleus  protein export from nucleus  mitotic nuclear envelope disassembly  regulation of glucose transport  viral process  protein sumoylation  viral transcription  gene silencing by RNA  nuclear membrane  metal ion binding  intracellular transport of virus  regulation of cellular response to heat  
Ontology : EGO-EBIRNA binding  nuclear export signal receptor activity  protein binding  nucleus  nuclear envelope  nuclear pore  nucleoplasm  cytosol  cytosol  mRNA export from nucleus  tRNA export from nucleus  protein export from nucleus  mitotic nuclear envelope disassembly  regulation of glucose transport  viral process  protein sumoylation  viral transcription  gene silencing by RNA  nuclear membrane  metal ion binding  intracellular transport of virus  regulation of cellular response to heat  
Pathways : KEGGRNA transport   
NDEx NetworkNUPL2
Atlas of Cancer Signalling NetworkNUPL2
Wikipedia pathwaysNUPL2
Orthology - Evolution
OrthoDB11097
GeneTree (enSembl)ENSG00000136243
Phylogenetic Trees/Animal Genes : TreeFamNUPL2
HOVERGENO15504
HOGENOMO15504
Homologs : HomoloGeneNUPL2
Homology/Alignments : Family Browser (UCSC)NUPL2
Gene fusions - Rearrangements
Fusion : MitelmanGPNMB/NUPL2 [7p15.3/7p15.3]  [t(7;7)(p15;p15)]  
Fusion : MitelmanPACSIN2/NUPL2 [22q13.2/7p15.3]  [t(7;22)(p15;q13)]  
Fusion: TCGA_MDACCGPNMB 7p15.3 NUPL2 7p15.3 BRCA
Fusion: TCGA_MDACCPACSIN2 22q13.2 NUPL2 7p15.3 BRCA
Tumor Fusion PortalNUPL2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUPL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NUPL2
dbVarNUPL2
ClinVarNUPL2
1000_GenomesNUPL2 
Exome Variant ServerNUPL2
ExAC (Exome Aggregation Consortium)ENSG00000136243
GNOMAD BrowserENSG00000136243
Genetic variants : HAPMAP11097
Genomic Variants (DGV)NUPL2 [DGVbeta]
DECIPHERNUPL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNUPL2 
Mutations
ICGC Data PortalNUPL2 
TCGA Data PortalNUPL2 
Broad Tumor PortalNUPL2
OASIS PortalNUPL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNUPL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNUPL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NUPL2
DgiDB (Drug Gene Interaction Database)NUPL2
DoCM (Curated mutations)NUPL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NUPL2 (select a term)
intoGenNUPL2
Cancer3DNUPL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETNUPL2
MedgenNUPL2
Genetic Testing Registry NUPL2
NextProtO15504 [Medical]
TSGene11097
GENETestsNUPL2
Target ValidationNUPL2
Huge Navigator NUPL2 [HugePedia]
snp3D : Map Gene to Disease11097
BioCentury BCIQNUPL2
ClinGenNUPL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11097
Chemical/Pharm GKB GenePA134990469
Clinical trialNUPL2
Miscellaneous
canSAR (ICR)NUPL2 (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNUPL2
EVEXNUPL2
GoPubMedNUPL2
iHOPNUPL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:27:02 CET 2017

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