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NUS1 (NUS1 dehydrodolichyl diphosphate synthase subunit)

Identity

Alias_namesC6orf68
chromosome 6 open reading frame 68
nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)
Alias_symbol (synonym)MGC7199
NgBR
TANGO14
Other aliasCDG1AA
MGC:7199
HGNC (Hugo) NUS1
LocusID (NCBI) 116150
Atlas_Id 54853
Location 6q22.1  [Link to chromosome band 6q22]
Location_base_pair Starts at 117675454 and ends at 117710723 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NUS1   21042
Cards
Entrez_Gene (NCBI)NUS1  116150  NUS1 dehydrodolichyl diphosphate synthase subunit
AliasesC6orf68; CDG1AA; MGC:7199; NgBR; 
TANGO14
GeneCards (Weizmann)NUS1
Ensembl hg19 (Hinxton)ENSG00000153989 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000153989 [Gene_View]  chr6:117675454-117710723 [Contig_View]  NUS1 [Vega]
ICGC DataPortalENSG00000153989
TCGA cBioPortalNUS1
AceView (NCBI)NUS1
Genatlas (Paris)NUS1
WikiGenes116150
SOURCE (Princeton)NUS1
Genetics Home Reference (NIH)NUS1
Genomic and cartography
GoldenPath hg38 (UCSC)NUS1  -     chr6:117675454-117710723 +  6q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NUS1  -     6q22.1   [Description]    (hg19-Feb_2009)
EnsemblNUS1 - 6q22.1 [CytoView hg19]  NUS1 - 6q22.1 [CytoView hg38]
Mapping of homologs : NCBINUS1 [Mapview hg19]  NUS1 [Mapview hg38]
OMIM610463   617082   
Gene and transcription
Genbank (Entrez)AJ420576 AK025467 AK125119 AK126335 AK130093
RefSeq transcript (Entrez)NM_138459
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NUS1
Cluster EST : UnigeneHs.289008 [ NCBI ]
CGAP (NCI)Hs.289008
Alternative Splicing GalleryENSG00000153989
Gene ExpressionNUS1 [ NCBI-GEO ]   NUS1 [ EBI - ARRAY_EXPRESS ]   NUS1 [ SEEK ]   NUS1 [ MEM ]
Gene Expression Viewer (FireBrowse)NUS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)116150
GTEX Portal (Tissue expression)NUS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96E22   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96E22  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96E22
Splice isoforms : SwissVarQ96E22
PhosPhoSitePlusQ96E22
Domains : Interpro (EBI)UPP_synth-like   
Domain families : Pfam (Sanger)Prenyltransf (PF01255)   
Domain families : Pfam (NCBI)pfam01255   
Conserved Domain (NCBI)NUS1
DMDM Disease mutations116150
Blocks (Seattle)NUS1
SuperfamilyQ96E22
Human Protein AtlasENSG00000153989
Peptide AtlasQ96E22
HPRD12894
IPIIPI00061142   
Protein Interaction databases
DIP (DOE-UCLA)Q96E22
IntAct (EBI)Q96E22
FunCoupENSG00000153989
BioGRIDNUS1
STRING (EMBL)NUS1
ZODIACNUS1
Ontologies - Pathways
QuickGOQ96E22
Ontology : AmiGOangiogenesis  molecular_function  prenyltransferase activity  protein binding  endoplasmic reticulum membrane  endoplasmic reticulum membrane  dolichyl diphosphate biosynthetic process  integral component of membrane  dolichol biosynthetic process  cell differentiation  regulation of intracellular cholesterol transport  protein mannosylation  cholesterol homeostasis  
Ontology : EGO-EBIangiogenesis  molecular_function  prenyltransferase activity  protein binding  endoplasmic reticulum membrane  endoplasmic reticulum membrane  dolichyl diphosphate biosynthetic process  integral component of membrane  dolichol biosynthetic process  cell differentiation  regulation of intracellular cholesterol transport  protein mannosylation  cholesterol homeostasis  
NDEx NetworkNUS1
Atlas of Cancer Signalling NetworkNUS1
Wikipedia pathwaysNUS1
Orthology - Evolution
OrthoDB116150
GeneTree (enSembl)ENSG00000153989
Phylogenetic Trees/Animal Genes : TreeFamNUS1
HOVERGENQ96E22
HOGENOMQ96E22
Homologs : HomoloGeneNUS1
Homology/Alignments : Family Browser (UCSC)NUS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NUS1
dbVarNUS1
ClinVarNUS1
1000_GenomesNUS1 
Exome Variant ServerNUS1
ExAC (Exome Aggregation Consortium)NUS1 (select the gene name)
Genetic variants : HAPMAP116150
Genomic Variants (DGV)NUS1 [DGVbeta]
DECIPHERNUS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNUS1 
Mutations
ICGC Data PortalNUS1 
TCGA Data PortalNUS1 
Broad Tumor PortalNUS1
OASIS PortalNUS1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNUS1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNUS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NUS1
DgiDB (Drug Gene Interaction Database)NUS1
DoCM (Curated mutations)NUS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NUS1 (select a term)
intoGenNUS1
Cancer3DNUS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610463    617082   
Orphanet
MedgenNUS1
Genetic Testing Registry NUS1
NextProtQ96E22 [Medical]
TSGene116150
GENETestsNUS1
Target ValidationNUS1
Huge Navigator NUS1 [HugePedia]
snp3D : Map Gene to Disease116150
BioCentury BCIQNUS1
ClinGenNUS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD116150
Chemical/Pharm GKB GenePA162398248
Clinical trialNUS1
Miscellaneous
canSAR (ICR)NUS1 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNUS1
EVEXNUS1
GoPubMedNUS1
iHOPNUS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:47:44 CEST 2017

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