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NUTF2 (nuclear transport factor 2)

Identity

Alias_symbol (synonym)NTF2
PP15
Other aliasNTF-2
HGNC (Hugo) NUTF2
LocusID (NCBI) 10204
Atlas_Id 53147
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 67846732 and ends at 67872566 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CENPT (16q22.1) / NUTF2 (16q22.1)CIT (12q24.23) / NUTF2 (16q22.1)ENSA (1q21.3) / NUTF2 (16q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NUTF2   13722
Cards
Entrez_Gene (NCBI)NUTF2  10204  nuclear transport factor 2
AliasesNTF-2; NTF2; PP15
GeneCards (Weizmann)NUTF2
Ensembl hg19 (Hinxton)ENSG00000102898 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000102898 [Gene_View]  chr16:67846732-67872566 [Contig_View]  NUTF2 [Vega]
ICGC DataPortalENSG00000102898
TCGA cBioPortalNUTF2
AceView (NCBI)NUTF2
Genatlas (Paris)NUTF2
WikiGenes10204
SOURCE (Princeton)NUTF2
Genetics Home Reference (NIH)NUTF2
Genomic and cartography
GoldenPath hg38 (UCSC)NUTF2  -     chr16:67846732-67872566 +  16q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NUTF2  -     16q22.1   [Description]    (hg19-Feb_2009)
EnsemblNUTF2 - 16q22.1 [CytoView hg19]  NUTF2 - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBINUTF2 [Mapview hg19]  NUTF2 [Mapview hg38]
OMIM605813   
Gene and transcription
Genbank (Entrez)AK293739 AK311822 BC002348 BC033653 BP216441
RefSeq transcript (Entrez)NM_001322038 NM_001322039 NM_001322040 NM_001322041 NM_005796
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NUTF2
Cluster EST : UnigeneHs.356630 [ NCBI ]
CGAP (NCI)Hs.356630
Alternative Splicing GalleryENSG00000102898
Gene ExpressionNUTF2 [ NCBI-GEO ]   NUTF2 [ EBI - ARRAY_EXPRESS ]   NUTF2 [ SEEK ]   NUTF2 [ MEM ]
Gene Expression Viewer (FireBrowse)NUTF2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10204
GTEX Portal (Tissue expression)NUTF2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP61970   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP61970  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP61970
Splice isoforms : SwissVarP61970
PhosPhoSitePlusP61970
Domaine pattern : Prosite (Expaxy)NTF2_DOMAIN (PS50177)   
Domains : Interpro (EBI)NTF2    NTF2-like_dom    Nuclear_transport_factor_2_euk   
Domain families : Pfam (Sanger)NTF2 (PF02136)   
Domain families : Pfam (NCBI)pfam02136   
Conserved Domain (NCBI)NUTF2
DMDM Disease mutations10204
Blocks (Seattle)NUTF2
PDB (SRS)1GY5   
PDB (PDBSum)1GY5   
PDB (IMB)1GY5   
PDB (RSDB)1GY5   
Structural Biology KnowledgeBase1GY5   
SCOP (Structural Classification of Proteins)1GY5   
CATH (Classification of proteins structures)1GY5   
SuperfamilyP61970
Human Protein AtlasENSG00000102898
Peptide AtlasP61970
HPRD12050
IPIIPI00009901   
Protein Interaction databases
DIP (DOE-UCLA)P61970
IntAct (EBI)P61970
FunCoupENSG00000102898
BioGRIDNUTF2
STRING (EMBL)NUTF2
ZODIACNUTF2
Ontologies - Pathways
QuickGOP61970
Ontology : AmiGOprotein import into nucleus, translocation  nucleocytoplasmic transporter activity  protein binding  nuclear inner membrane  nuclear outer membrane  nucleoplasm  cytosol  protein import into nucleus  protein export from nucleus  protein transmembrane transporter activity  Ran GTPase binding  Ran GTPase binding  nuclear membrane  positive regulation of protein import into nucleus  nuclear pore central transport channel  mRNA transport  extracellular exosome  protein transmembrane transport  protein localization to nuclear pore  negative regulation of vascular endothelial growth factor production  
Ontology : EGO-EBIprotein import into nucleus, translocation  nucleocytoplasmic transporter activity  protein binding  nuclear inner membrane  nuclear outer membrane  nucleoplasm  cytosol  protein import into nucleus  protein export from nucleus  protein transmembrane transporter activity  Ran GTPase binding  Ran GTPase binding  nuclear membrane  positive regulation of protein import into nucleus  nuclear pore central transport channel  mRNA transport  extracellular exosome  protein transmembrane transport  protein localization to nuclear pore  negative regulation of vascular endothelial growth factor production  
Pathways : BIOCARTAMechanism of Protein Import into the Nucleus [Genes]   
NDEx NetworkNUTF2
Atlas of Cancer Signalling NetworkNUTF2
Wikipedia pathwaysNUTF2
Orthology - Evolution
OrthoDB10204
GeneTree (enSembl)ENSG00000102898
Phylogenetic Trees/Animal Genes : TreeFamNUTF2
HOVERGENP61970
HOGENOMP61970
Homologs : HomoloGeneNUTF2
Homology/Alignments : Family Browser (UCSC)NUTF2
Gene fusions - Rearrangements
Fusion : MitelmanCENPT/NUTF2 [16q22.1/16q22.1]  [t(16;16)(q22;q22)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUTF2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NUTF2
dbVarNUTF2
ClinVarNUTF2
1000_GenomesNUTF2 
Exome Variant ServerNUTF2
ExAC (Exome Aggregation Consortium)NUTF2 (select the gene name)
Genetic variants : HAPMAP10204
Genomic Variants (DGV)NUTF2 [DGVbeta]
DECIPHERNUTF2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNUTF2 
Mutations
ICGC Data PortalNUTF2 
TCGA Data PortalNUTF2 
Broad Tumor PortalNUTF2
OASIS PortalNUTF2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNUTF2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNUTF2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NUTF2
DgiDB (Drug Gene Interaction Database)NUTF2
DoCM (Curated mutations)NUTF2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NUTF2 (select a term)
intoGenNUTF2
Cancer3DNUTF2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605813   
Orphanet
MedgenNUTF2
Genetic Testing Registry NUTF2
NextProtP61970 [Medical]
TSGene10204
GENETestsNUTF2
Target ValidationNUTF2
Huge Navigator NUTF2 [HugePedia]
snp3D : Map Gene to Disease10204
BioCentury BCIQNUTF2
ClinGenNUTF2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10204
Chemical/Pharm GKB GenePA38365
Clinical trialNUTF2
Miscellaneous
canSAR (ICR)NUTF2 (select the gene name)
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNUTF2
EVEXNUTF2
GoPubMedNUTF2
iHOPNUTF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:47:44 CEST 2017

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