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NUTM2A (NUT family member 2A)

Identity

Alias_namesFAM22A
family with sequence similarity 22
Other alias
HGNC (Hugo) NUTM2A
LocusID (NCBI) 728118
Atlas_Id 55060
Location 10q23.2  [Link to chromosome band 10q23]
Location_base_pair Starts at 88985205 and ends at 88994733 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NUTM2A (10q23.2) / YWHAE (17p13.3)YWHAE (17p13.3) / NUTM2A (10q23.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Uterus: High-grade endometrial stromal sarcoma with t(10;17)(q22-23;p13) YWHAE/NUTM2A-B


External links

Nomenclature
HGNC (Hugo)NUTM2A   23438
Cards
Entrez_Gene (NCBI)NUTM2A  728118  NUT family member 2A
AliasesFAM22A
GeneCards (Weizmann)NUTM2A
Ensembl hg19 (Hinxton)ENSG00000184923 [Gene_View]  chr10:88985205-88994733 [Contig_View]  NUTM2A [Vega]
Ensembl hg38 (Hinxton)ENSG00000184923 [Gene_View]  chr10:88985205-88994733 [Contig_View]  NUTM2A [Vega]
ICGC DataPortalENSG00000184923
TCGA cBioPortalNUTM2A
AceView (NCBI)NUTM2A
Genatlas (Paris)NUTM2A
WikiGenes728118
SOURCE (Princeton)NUTM2A
Genetics Home Reference (NIH)NUTM2A
Genomic and cartography
GoldenPath hg19 (UCSC)NUTM2A  -     chr10:88985205-88994733 +  10q23.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NUTM2A  -     10q23.2   [Description]    (hg38-Dec_2013)
EnsemblNUTM2A - 10q23.2 [CytoView hg19]  NUTM2A - 10q23.2 [CytoView hg38]
Mapping of homologs : NCBINUTM2A [Mapview hg19]  NUTM2A [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC033231 BC092519 EG328792
RefSeq transcript (Entrez)NM_001099338
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)NUTM2A
Cluster EST : UnigeneHs.710565 [ NCBI ]
CGAP (NCI)Hs.710565
Alternative Splicing GalleryENSG00000184923
Gene ExpressionNUTM2A [ NCBI-GEO ]   NUTM2A [ EBI - ARRAY_EXPRESS ]   NUTM2A [ SEEK ]   NUTM2A [ MEM ]
Gene Expression Viewer (FireBrowse)NUTM2A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728118
GTEX Portal (Tissue expression)NUTM2A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IVF1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IVF1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IVF1
Splice isoforms : SwissVarQ8IVF1
PhosPhoSitePlusQ8IVF1
Domains : Interpro (EBI)NUT    NUT_N   
Domain families : Pfam (Sanger)NUT (PF12881)   
Domain families : Pfam (NCBI)pfam12881   
Conserved Domain (NCBI)NUTM2A
DMDM Disease mutations728118
Blocks (Seattle)NUTM2A
SuperfamilyQ8IVF1
Human Protein AtlasENSG00000184923
Peptide AtlasQ8IVF1
IPIIPI00642550   IPI00871138   IPI00942216   IPI01013175   
Protein Interaction databases
DIP (DOE-UCLA)Q8IVF1
IntAct (EBI)Q8IVF1
FunCoupENSG00000184923
BioGRIDNUTM2A
STRING (EMBL)NUTM2A
ZODIACNUTM2A
Ontologies - Pathways
QuickGOQ8IVF1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkNUTM2A
Atlas of Cancer Signalling NetworkNUTM2A
Wikipedia pathwaysNUTM2A
Orthology - Evolution
OrthoDB728118
GeneTree (enSembl)ENSG00000184923
Phylogenetic Trees/Animal Genes : TreeFamNUTM2A
HOVERGENQ8IVF1
HOGENOMQ8IVF1
Homologs : HomoloGeneNUTM2A
Homology/Alignments : Family Browser (UCSC)NUTM2A
Gene fusions - Rearrangements
Fusion : MitelmanYWHAE/NUTM2A [17p13.3/10q23.2]  [t(10;17)(q22;p13)]  [t(10;17)(q23;p13)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUTM2A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NUTM2A
dbVarNUTM2A
ClinVarNUTM2A
1000_GenomesNUTM2A 
Exome Variant ServerNUTM2A
ExAC (Exome Aggregation Consortium)NUTM2A (select the gene name)
Genetic variants : HAPMAP728118
Genomic Variants (DGV)NUTM2A [DGVbeta]
DECIPHER (Syndromes)10:88985205-88994733  ENSG00000184923
CONAN: Copy Number AnalysisNUTM2A 
Mutations
ICGC Data PortalNUTM2A 
TCGA Data PortalNUTM2A 
Broad Tumor PortalNUTM2A
OASIS PortalNUTM2A [ Somatic mutations - Copy number]
Cancer Gene: CensusNUTM2A 
Somatic Mutations in Cancer : COSMICNUTM2A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNUTM2A
BioMutasearch NUTM2A
DgiDB (Drug Gene Interaction Database)NUTM2A
DoCM (Curated mutations)NUTM2A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NUTM2A (select a term)
intoGenNUTM2A
Cancer3DNUTM2A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet18760   
MedgenNUTM2A
Genetic Testing Registry NUTM2A
NextProtQ8IVF1 [Medical]
TSGene728118
GENETestsNUTM2A
Huge Navigator NUTM2A [HugePedia]
snp3D : Map Gene to Disease728118
BioCentury BCIQNUTM2A
ClinGenNUTM2A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728118
Chemical/Pharm GKB GenePA134875735
Clinical trialNUTM2A
Miscellaneous
canSAR (ICR)NUTM2A (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNUTM2A
EVEXNUTM2A
GoPubMedNUTM2A
iHOPNUTM2A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:19:39 CET 2017

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