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NUTM2B (NUT family member 2B)

Identity

Alias (NCBI)FAM22B
bA119F19.1
HGNC (Hugo) NUTM2B
HGNC Alias symbbA119F19.1
HGNC Previous nameFAM22B
HGNC Previous namefamily with sequence similarity 22, member B
LocusID (NCBI) 729262
Atlas_Id 55061
Location 10q22.3  [Link to chromosome band 10q22]
Location_base_pair Starts at 79703227 and ends at 79712757 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NUTM2B (10q22.3) / YWHAE (17p13.3)YWHAE (17p13.3) / NUTM2B (10q22.3)YWHAE NUTM2B

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 4 ]
  Uterus: High-grade endometrial stromal sarcoma with t(10;17)(q22-23;p13) YWHAE/NUTM2A-B
t(10;17)(q22;p13) YWHAE/NUTM2B
t(10;17)(q22;p13) YWHAE/NUTM2B
t(10;17)(q23;p13) YWHAE/NUTM2B


External links

Nomenclature
HGNC (Hugo)NUTM2B   23445
Cards
Entrez_Gene (NCBI)NUTM2B    NUT family member 2B
AliasesFAM22B; bA119F19.1
GeneCards (Weizmann)NUTM2B
Ensembl hg19 (Hinxton)ENSG00000188199 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188199 [Gene_View]  ENSG00000188199 [Sequence]  chr10:79703227-79712757 [Contig_View]  NUTM2B [Vega]
ICGC DataPortalENSG00000188199
TCGA cBioPortalNUTM2B
AceView (NCBI)NUTM2B
Genatlas (Paris)NUTM2B
SOURCE (Princeton)NUTM2B
Genetics Home Reference (NIH)NUTM2B
Genomic and cartography
GoldenPath hg38 (UCSC)NUTM2B  -     chr10:79703227-79712757 +  10q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NUTM2B  -     10q22.3   [Description]    (hg19-Feb_2009)
GoldenPathNUTM2B - 10q22.3 [CytoView hg19]  NUTM2B - 10q22.3 [CytoView hg38]
ImmunoBaseENSG00000188199
genome Data Viewer NCBINUTM2B [Mapview hg19]  
Gene and transcription
Genbank (Entrez)HY013942
RefSeq transcript (Entrez)NM_001278495
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NUTM2B
Alternative Splicing GalleryENSG00000188199
Gene ExpressionNUTM2B [ NCBI-GEO ]   NUTM2B [ EBI - ARRAY_EXPRESS ]   NUTM2B [ SEEK ]   NUTM2B [ MEM ]
Gene Expression Viewer (FireBrowse)NUTM2B [ Firebrowse - Broad ]
GenevisibleExpression of NUTM2B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729262
GTEX Portal (Tissue expression)NUTM2B
Human Protein AtlasENSG00000188199-NUTM2B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NNL0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NNL0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NNL0
Splice isoforms : SwissVarA6NNL0
PhosPhoSitePlusA6NNL0
Domains : Interpro (EBI)NUT    NUT_N   
Domain families : Pfam (Sanger)NUT (PF12881)   
Domain families : Pfam (NCBI)pfam12881   
Conserved Domain (NCBI)NUTM2B
Blocks (Seattle)NUTM2B
SuperfamilyA6NNL0
Human Protein Atlas [tissue]ENSG00000188199-NUTM2B [tissue]
Peptide AtlasA6NNL0
IPIIPI00983628   IPI00956182   
Protein Interaction databases
DIP (DOE-UCLA)A6NNL0
IntAct (EBI)A6NNL0
BioGRIDNUTM2B
STRING (EMBL)NUTM2B
ZODIACNUTM2B
Ontologies - Pathways
QuickGOA6NNL0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkNUTM2B
Atlas of Cancer Signalling NetworkNUTM2B
Wikipedia pathwaysNUTM2B
Orthology - Evolution
OrthoDB729262
GeneTree (enSembl)ENSG00000188199
Phylogenetic Trees/Animal Genes : TreeFamNUTM2B
HOGENOMA6NNL0
Homologs : HomoloGeneNUTM2B
Homology/Alignments : Family Browser (UCSC)NUTM2B
Gene fusions - Rearrangements
Fusion : MitelmanYWHAE/NUTM2B [17p13.3/10q22.3]  
Fusion : QuiverNUTM2B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUTM2B [hg38]
dbVarNUTM2B
ClinVarNUTM2B
MonarchNUTM2B
1000_GenomesNUTM2B 
Exome Variant ServerNUTM2B
GNOMAD BrowserENSG00000188199
Varsome BrowserNUTM2B
Genomic Variants (DGV)NUTM2B [DGVbeta]
DECIPHERNUTM2B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNUTM2B 
Mutations
ICGC Data PortalNUTM2B 
TCGA Data PortalNUTM2B 
Broad Tumor PortalNUTM2B
OASIS PortalNUTM2B [ Somatic mutations - Copy number]
Cancer Gene: CensusNUTM2B 
Somatic Mutations in Cancer : COSMICNUTM2B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNUTM2B
Mutations and Diseases : HGMDNUTM2B
BioMutasearch NUTM2B
DgiDB (Drug Gene Interaction Database)NUTM2B
DoCM (Curated mutations)NUTM2B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NUTM2B (select a term)
intoGenNUTM2B
Cancer3DNUTM2B(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet18760    23715   
DisGeNETNUTM2B
MedgenNUTM2B
Genetic Testing Registry NUTM2B
NextProtA6NNL0 [Medical]
GENETestsNUTM2B
Target ValidationNUTM2B
Huge Navigator NUTM2B [HugePedia]
ClinGenNUTM2B
Clinical trials, drugs, therapy
MyCancerGenomeNUTM2B
Protein Interactions : CTD
Pharm GKB GenePA134908712
PharosA6NNL0
Clinical trialNUTM2B
Miscellaneous
canSAR (ICR)NUTM2B (select the gene name)
HarmonizomeNUTM2B
DataMed IndexNUTM2B
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXNUTM2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jan 1 18:29:43 CET 2021

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