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NUTM2B (NUT family member 2B)

Identity

Alias_namesFAM22B
family with sequence similarity 22
Alias_symbol (synonym)bA119F19.1
Other alias
HGNC (Hugo) NUTM2B
LocusID (NCBI) 729262
Atlas_Id 55061
Location 10q22.3  [Link to chromosome band 10q22]
Location_base_pair Starts at 81462983 and ends at 81472513 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NUTM2B (10q22.3) / YWHAE (17p13.3)YWHAE (17p13.3) / NUTM2B (10q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Uterus: High-grade endometrial stromal sarcoma with t(10;17)(q22-23;p13) YWHAE/NUTM2A-B


External links

Nomenclature
HGNC (Hugo)NUTM2B   23445
Cards
Entrez_Gene (NCBI)NUTM2B  729262  NUT family member 2B
AliasesFAM22B; bA119F19.1
GeneCards (Weizmann)NUTM2B
Ensembl hg19 (Hinxton)ENSG00000188199 [Gene_View]  chr10:81462983-81472513 [Contig_View]  NUTM2B [Vega]
Ensembl hg38 (Hinxton)ENSG00000188199 [Gene_View]  chr10:81462983-81472513 [Contig_View]  NUTM2B [Vega]
ICGC DataPortalENSG00000188199
TCGA cBioPortalNUTM2B
AceView (NCBI)NUTM2B
Genatlas (Paris)NUTM2B
WikiGenes729262
SOURCE (Princeton)NUTM2B
Genetics Home Reference (NIH)NUTM2B
Genomic and cartography
GoldenPath hg19 (UCSC)NUTM2B  -     chr10:81462983-81472513 +  10q22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NUTM2B  -     10q22.3   [Description]    (hg38-Dec_2013)
EnsemblNUTM2B - 10q22.3 [CytoView hg19]  NUTM2B - 10q22.3 [CytoView hg38]
Mapping of homologs : NCBINUTM2B [Mapview hg19]  NUTM2B [Mapview hg38]
Gene and transcription
Genbank (Entrez)HY013942
RefSeq transcript (Entrez)NM_001278495
RefSeq genomic (Entrez)NC_000010 NC_018921 NG_012780 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)NUTM2B
Cluster EST : UnigeneHs.742755 [ NCBI ]
CGAP (NCI)Hs.742755
Alternative Splicing GalleryENSG00000188199
Gene ExpressionNUTM2B [ NCBI-GEO ]   NUTM2B [ EBI - ARRAY_EXPRESS ]   NUTM2B [ SEEK ]   NUTM2B [ MEM ]
Gene Expression Viewer (FireBrowse)NUTM2B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729262
GTEX Portal (Tissue expression)NUTM2B
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NNL0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NNL0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NNL0
Splice isoforms : SwissVarA6NNL0
PhosPhoSitePlusA6NNL0
Domains : Interpro (EBI)NUT    NUT_N   
Domain families : Pfam (Sanger)NUT (PF12881)   
Domain families : Pfam (NCBI)pfam12881   
Conserved Domain (NCBI)NUTM2B
DMDM Disease mutations729262
Blocks (Seattle)NUTM2B
SuperfamilyA6NNL0
Human Protein AtlasENSG00000188199
Peptide AtlasA6NNL0
IPIIPI00983628   IPI00956182   
Protein Interaction databases
DIP (DOE-UCLA)A6NNL0
IntAct (EBI)A6NNL0
FunCoupENSG00000188199
BioGRIDNUTM2B
STRING (EMBL)NUTM2B
ZODIACNUTM2B
Ontologies - Pathways
QuickGOA6NNL0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkNUTM2B
Atlas of Cancer Signalling NetworkNUTM2B
Wikipedia pathwaysNUTM2B
Orthology - Evolution
OrthoDB729262
GeneTree (enSembl)ENSG00000188199
Phylogenetic Trees/Animal Genes : TreeFamNUTM2B
HOVERGENA6NNL0
HOGENOMA6NNL0
Homologs : HomoloGeneNUTM2B
Homology/Alignments : Family Browser (UCSC)NUTM2B
Gene fusions - Rearrangements
Fusion : MitelmanYWHAE/NUTM2B [17p13.3/10q22.3]  [t(10;17)(q22;p13)]  [t(10;17)(q23;p13)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUTM2B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NUTM2B
dbVarNUTM2B
ClinVarNUTM2B
1000_GenomesNUTM2B 
Exome Variant ServerNUTM2B
ExAC (Exome Aggregation Consortium)NUTM2B (select the gene name)
Genetic variants : HAPMAP729262
Genomic Variants (DGV)NUTM2B [DGVbeta]
DECIPHER (Syndromes)10:81462983-81472513  ENSG00000188199
CONAN: Copy Number AnalysisNUTM2B 
Mutations
ICGC Data PortalNUTM2B 
TCGA Data PortalNUTM2B 
Broad Tumor PortalNUTM2B
OASIS PortalNUTM2B [ Somatic mutations - Copy number]
Cancer Gene: CensusNUTM2B 
Somatic Mutations in Cancer : COSMICNUTM2B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNUTM2B
BioMutasearch NUTM2B
DgiDB (Drug Gene Interaction Database)NUTM2B
DoCM (Curated mutations)NUTM2B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NUTM2B (select a term)
intoGenNUTM2B
Cancer3DNUTM2B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet18760    23715   
MedgenNUTM2B
Genetic Testing Registry NUTM2B
NextProtA6NNL0 [Medical]
TSGene729262
GENETestsNUTM2B
Huge Navigator NUTM2B [HugePedia]
snp3D : Map Gene to Disease729262
BioCentury BCIQNUTM2B
ClinGenNUTM2B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729262
Chemical/Pharm GKB GenePA134908712
Clinical trialNUTM2B
Miscellaneous
canSAR (ICR)NUTM2B (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNUTM2B
EVEXNUTM2B
GoPubMedNUTM2B
iHOPNUTM2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:12:56 CEST 2017

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