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NUTM2E (NUT family member 2E)

Identity

Alias_namesFAM22E
family with sequence similarity 22
Other alias
HGNC (Hugo) NUTM2E
LocusID (NCBI) 283008
Atlas_Id 54058
Location 10q22.3  [Link to chromosome band 10q22]
Location_base_pair Starts at 79841358 and ends at 79850878 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Kidney: Clear cell sarcoma with t(10;17)(q22;p13) YWHAE/NUTM2E

External links

Nomenclature
HGNC (Hugo)NUTM2E   23448
Cards
Entrez_Gene (NCBI)NUTM2E  283008  NUT family member 2E
AliasesFAM22E
GeneCards (Weizmann)NUTM2E
Ensembl hg19 (Hinxton)ENSG00000228570 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000228570 [Gene_View]  ENSG00000228570 [Sequence]  chr10:79841358-79850878 [Contig_View]  NUTM2E [Vega]
ICGC DataPortalENSG00000228570
TCGA cBioPortalNUTM2E
AceView (NCBI)NUTM2E
Genatlas (Paris)NUTM2E
WikiGenes283008
SOURCE (Princeton)NUTM2E
Genetics Home Reference (NIH)NUTM2E
Genomic and cartography
GoldenPath hg38 (UCSC)NUTM2E  -     chr10:79841358-79850878 +  10q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NUTM2E  -     10q22.3   [Description]    (hg19-Feb_2009)
EnsemblNUTM2E - 10q22.3 [CytoView hg19]  NUTM2E - 10q22.3 [CytoView hg38]
Mapping of homologs : NCBINUTM2E [Mapview hg19]  NUTM2E [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001355263
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NUTM2E
Alternative Splicing GalleryENSG00000228570
Gene ExpressionNUTM2E [ NCBI-GEO ]   NUTM2E [ EBI - ARRAY_EXPRESS ]   NUTM2E [ SEEK ]   NUTM2E [ MEM ]
Gene Expression Viewer (FireBrowse)NUTM2E [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283008
GTEX Portal (Tissue expression)NUTM2E
Human Protein AtlasENSG00000228570-NUTM2E [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtB1AL46   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtB1AL46  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProB1AL46
Splice isoforms : SwissVarB1AL46
PhosPhoSitePlusB1AL46
Domains : Interpro (EBI)NUT    NUT_N   
Domain families : Pfam (Sanger)NUT (PF12881)   
Domain families : Pfam (NCBI)pfam12881   
Conserved Domain (NCBI)NUTM2E
DMDM Disease mutations283008
Blocks (Seattle)NUTM2E
SuperfamilyB1AL46
Human Protein Atlas [tissue]ENSG00000228570-NUTM2E [tissue]
Peptide AtlasB1AL46
HPRD16878
IPIIPI00888429   
Protein Interaction databases
DIP (DOE-UCLA)B1AL46
IntAct (EBI)B1AL46
FunCoupENSG00000228570
BioGRIDNUTM2E
STRING (EMBL)NUTM2E
ZODIACNUTM2E
Ontologies - Pathways
QuickGOB1AL46
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkNUTM2E
Atlas of Cancer Signalling NetworkNUTM2E
Wikipedia pathwaysNUTM2E
Orthology - Evolution
OrthoDB283008
GeneTree (enSembl)ENSG00000228570
Phylogenetic Trees/Animal Genes : TreeFamNUTM2E
HOVERGENB1AL46
HOGENOMB1AL46
Homologs : HomoloGeneNUTM2E
Homology/Alignments : Family Browser (UCSC)NUTM2E
Gene fusions - Rearrangements
Fusion : MitelmanYWHAE/NUTM2E [17p13.3/-]  [t(10;17)(q22;p13)]  
Fusion : QuiverNUTM2E
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUTM2E [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NUTM2E
dbVarNUTM2E
ClinVarNUTM2E
1000_GenomesNUTM2E 
Exome Variant ServerNUTM2E
ExAC (Exome Aggregation Consortium)ENSG00000228570
GNOMAD BrowserENSG00000228570
Varsome BrowserNUTM2E
Genetic variants : HAPMAP283008
Genomic Variants (DGV)NUTM2E [DGVbeta]
DECIPHERNUTM2E [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNUTM2E 
Mutations
ICGC Data PortalNUTM2E 
TCGA Data PortalNUTM2E 
Broad Tumor PortalNUTM2E
OASIS PortalNUTM2E [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNUTM2E
BioMutasearch NUTM2E
DgiDB (Drug Gene Interaction Database)NUTM2E
DoCM (Curated mutations)NUTM2E (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NUTM2E (select a term)
intoGenNUTM2E
Cancer3DNUTM2E(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet23715   
DisGeNETNUTM2E
MedgenNUTM2E
Genetic Testing Registry NUTM2E
NextProtB1AL46 [Medical]
TSGene283008
GENETestsNUTM2E
Target ValidationNUTM2E
Huge Navigator NUTM2E [HugePedia]
snp3D : Map Gene to Disease283008
BioCentury BCIQNUTM2E
ClinGenNUTM2E
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283008
Chemical/Pharm GKB GenePA134988973
Clinical trialNUTM2E
Miscellaneous
canSAR (ICR)NUTM2E (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNUTM2E
EVEXNUTM2E
GoPubMedNUTM2E
iHOPNUTM2E
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:27:25 CET 2018
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