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NWD1 (NACHT and WD repeat domain containing 1)

Identity

Other alias-
HGNC (Hugo) NWD1
LocusID (NCBI) 284434
Atlas_Id 54982
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 16719976 and ends at 16817963 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NWD1   27619
Cards
Entrez_Gene (NCBI)NWD1  284434  NACHT and WD repeat domain containing 1
Aliases
GeneCards (Weizmann)NWD1
Ensembl hg19 (Hinxton)ENSG00000188039 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188039 [Gene_View]  chr19:16719976-16817963 [Contig_View]  NWD1 [Vega]
ICGC DataPortalENSG00000188039
TCGA cBioPortalNWD1
AceView (NCBI)NWD1
Genatlas (Paris)NWD1
WikiGenes284434
SOURCE (Princeton)NWD1
Genetics Home Reference (NIH)NWD1
Genomic and cartography
GoldenPath hg38 (UCSC)NWD1  -     chr19:16719976-16817963 +  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NWD1  -     19p13.11   [Description]    (hg19-Feb_2009)
EnsemblNWD1 - 19p13.11 [CytoView hg19]  NWD1 - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBINWD1 [Mapview hg19]  NWD1 [Mapview hg38]
OMIM616250   
Gene and transcription
Genbank (Entrez)AA535500 AK026798 AK090685 BC117698 BU685952
RefSeq transcript (Entrez)NM_001007525 NM_001290355 NM_001347994
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NWD1
Cluster EST : UnigeneHs.406014 [ NCBI ]
CGAP (NCI)Hs.406014
Alternative Splicing GalleryENSG00000188039
Gene ExpressionNWD1 [ NCBI-GEO ]   NWD1 [ EBI - ARRAY_EXPRESS ]   NWD1 [ SEEK ]   NWD1 [ MEM ]
Gene Expression Viewer (FireBrowse)NWD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284434
GTEX Portal (Tissue expression)NWD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ149M9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ149M9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ149M9
Splice isoforms : SwissVarQ149M9
PhosPhoSitePlusQ149M9
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)Apc4_WD40_dom    P-loop_NTPase    Quinoprotein_ADH-like_supfam    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)ANAPC4_WD40 (PF12894)    WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam12894    pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)NWD1
DMDM Disease mutations284434
Blocks (Seattle)NWD1
SuperfamilyQ149M9
Human Protein AtlasENSG00000188039
Peptide AtlasQ149M9
HPRD17337
IPIIPI00744647   IPI00868965   IPI00470822   IPI00979257   IPI00978738   IPI01020707   IPI00973945   
Protein Interaction databases
DIP (DOE-UCLA)Q149M9
IntAct (EBI)Q149M9
FunCoupENSG00000188039
BioGRIDNWD1
STRING (EMBL)NWD1
ZODIACNWD1
Ontologies - Pathways
QuickGOQ149M9
Ontology : AmiGOATP binding  U5 snRNP  cytosol  RNA splicing  precatalytic spliceosome  catalytic step 2 spliceosome  
Ontology : EGO-EBIATP binding  U5 snRNP  cytosol  RNA splicing  precatalytic spliceosome  catalytic step 2 spliceosome  
NDEx NetworkNWD1
Atlas of Cancer Signalling NetworkNWD1
Wikipedia pathwaysNWD1
Orthology - Evolution
OrthoDB284434
GeneTree (enSembl)ENSG00000188039
Phylogenetic Trees/Animal Genes : TreeFamNWD1
HOVERGENQ149M9
HOGENOMQ149M9
Homologs : HomoloGeneNWD1
Homology/Alignments : Family Browser (UCSC)NWD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNWD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NWD1
dbVarNWD1
ClinVarNWD1
1000_GenomesNWD1 
Exome Variant ServerNWD1
ExAC (Exome Aggregation Consortium)NWD1 (select the gene name)
Genetic variants : HAPMAP284434
Genomic Variants (DGV)NWD1 [DGVbeta]
DECIPHERNWD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNWD1 
Mutations
ICGC Data PortalNWD1 
TCGA Data PortalNWD1 
Broad Tumor PortalNWD1
OASIS PortalNWD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNWD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNWD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NWD1
DgiDB (Drug Gene Interaction Database)NWD1
DoCM (Curated mutations)NWD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NWD1 (select a term)
intoGenNWD1
Cancer3DNWD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616250   
Orphanet
MedgenNWD1
Genetic Testing Registry NWD1
NextProtQ149M9 [Medical]
TSGene284434
GENETestsNWD1
Target ValidationNWD1
Huge Navigator NWD1 [HugePedia]
snp3D : Map Gene to Disease284434
BioCentury BCIQNWD1
ClinGenNWD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284434
Chemical/Pharm GKB GenePA162398263
Clinical trialNWD1
Miscellaneous
canSAR (ICR)NWD1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNWD1
EVEXNWD1
GoPubMedNWD1
iHOPNWD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:09:37 CEST 2017

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