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NWD2 (NACHT and WD repeat domain containing 2)

Identity

Alias_namesKIAA1239
KIAA1239
Other alias
HGNC (Hugo) NWD2
LocusID (NCBI) 57495
Atlas_Id 71059
Location 4p14  [Link to chromosome band 4p14]
Location_base_pair Starts at 37246690 and ends at 37451087 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NWD2   29229
Cards
Entrez_Gene (NCBI)NWD2  57495  NACHT and WD repeat domain containing 2
AliasesKIAA1239
GeneCards (Weizmann)NWD2
Ensembl hg19 (Hinxton)ENSG00000174145 [Gene_View]  chr4:37246690-37451087 [Contig_View]  NWD2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000174145 [Gene_View]  chr4:37246690-37451087 [Contig_View]  NWD2 [Vega]
ICGC DataPortalENSG00000174145
TCGA cBioPortalNWD2
AceView (NCBI)NWD2
Genatlas (Paris)NWD2
WikiGenes57495
SOURCE (Princeton)NWD2
Genetics Home Reference (NIH)NWD2
Genomic and cartography
GoldenPath hg19 (UCSC)NWD2  -     chr4:37246690-37451087 +  4p14   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NWD2  -     4p14   [Description]    (hg38-Dec_2013)
EnsemblNWD2 - 4p14 [CytoView hg19]  NWD2 - 4p14 [CytoView hg38]
Mapping of homologs : NCBINWD2 [Mapview hg19]  NWD2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB033065
RefSeq transcript (Entrez)NM_001144990
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_006238 NW_004929317
Consensus coding sequences : CCDS (NCBI)NWD2
Cluster EST : UnigeneHs.4280 [ NCBI ]
CGAP (NCI)Hs.4280
Alternative Splicing GalleryENSG00000174145
Gene ExpressionNWD2 [ NCBI-GEO ]   NWD2 [ EBI - ARRAY_EXPRESS ]   NWD2 [ SEEK ]   NWD2 [ MEM ]
Gene Expression Viewer (FireBrowse)NWD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57495
GTEX Portal (Tissue expression)NWD2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9ULI1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9ULI1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9ULI1
Splice isoforms : SwissVarQ9ULI1
PhosPhoSitePlusQ9ULI1
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)P-loop_NTPase    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)NWD2
DMDM Disease mutations57495
Blocks (Seattle)NWD2
SuperfamilyQ9ULI1
Human Protein AtlasENSG00000174145
Peptide AtlasQ9ULI1
IPIIPI00166979   
Protein Interaction databases
DIP (DOE-UCLA)Q9ULI1
IntAct (EBI)Q9ULI1
FunCoupENSG00000174145
BioGRIDNWD2
STRING (EMBL)NWD2
ZODIACNWD2
Ontologies - Pathways
QuickGOQ9ULI1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkNWD2
Atlas of Cancer Signalling NetworkNWD2
Wikipedia pathwaysNWD2
Orthology - Evolution
OrthoDB57495
GeneTree (enSembl)ENSG00000174145
Phylogenetic Trees/Animal Genes : TreeFamNWD2
HOVERGENQ9ULI1
HOGENOMQ9ULI1
Homologs : HomoloGeneNWD2
Homology/Alignments : Family Browser (UCSC)NWD2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNWD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NWD2
dbVarNWD2
ClinVarNWD2
1000_GenomesNWD2 
Exome Variant ServerNWD2
ExAC (Exome Aggregation Consortium)NWD2 (select the gene name)
Genetic variants : HAPMAP57495
Genomic Variants (DGV)NWD2 [DGVbeta]
DECIPHER (Syndromes)4:37246690-37451087  ENSG00000174145
CONAN: Copy Number AnalysisNWD2 
Mutations
ICGC Data PortalNWD2 
TCGA Data PortalNWD2 
Broad Tumor PortalNWD2
OASIS PortalNWD2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNWD2
BioMutasearch NWD2
DgiDB (Drug Gene Interaction Database)NWD2
DoCM (Curated mutations)NWD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NWD2 (select a term)
intoGenNWD2
Cancer3DNWD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNWD2
Genetic Testing Registry NWD2
NextProtQ9ULI1 [Medical]
TSGene57495
GENETestsNWD2
Huge Navigator NWD2 [HugePedia]
snp3D : Map Gene to Disease57495
BioCentury BCIQNWD2
ClinGenNWD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57495
Chemical/Pharm GKB GenePA145148614
Clinical trialNWD2
Miscellaneous
canSAR (ICR)NWD2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNWD2
EVEXNWD2
GoPubMedNWD2
iHOPNWD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:35:40 CET 2017

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