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NXF2B (nuclear RNA export factor 2B)

Identity

Alias_symbol (synonym)bA353J17.1
Other aliasTCP11X1
HGNC (Hugo) NXF2B
LocusID (NCBI) 728343
Atlas_Id 71061
Location Xq22.1  [Link to chromosome band Xq22]
Location_base_pair Starts at 102247100 and ends at 102326720 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NXF2B   23984
Cards
Entrez_Gene (NCBI)NXF2B  728343  nuclear RNA export factor 2B
AliasesTCP11X1; bA353J17.1
GeneCards (Weizmann)NXF2B
Ensembl hg19 (Hinxton)ENSG00000269437 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000269437 [Gene_View]  chrX:102247100-102326720 [Contig_View]  NXF2B [Vega]
ICGC DataPortalENSG00000269437
TCGA cBioPortalNXF2B
AceView (NCBI)NXF2B
Genatlas (Paris)NXF2B
WikiGenes728343
SOURCE (Princeton)NXF2B
Genetics Home Reference (NIH)NXF2B
Genomic and cartography
GoldenPath hg38 (UCSC)NXF2B  -     chrX:102247100-102326720 +  Xq22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NXF2B  -     Xq22.1   [Description]    (hg19-Feb_2009)
EnsemblNXF2B - Xq22.1 [CytoView hg19]  NXF2B - Xq22.1 [CytoView hg38]
Mapping of homologs : NCBINXF2B [Mapview hg19]  NXF2B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF285596 AJ277659 AK000423 AK303069 AK308255
RefSeq transcript (Entrez)NM_001099686
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NXF2B
Cluster EST : UnigeneHs.737538 [ NCBI ]
CGAP (NCI)Hs.737538
Alternative Splicing GalleryENSG00000269437
Gene ExpressionNXF2B [ NCBI-GEO ]   NXF2B [ EBI - ARRAY_EXPRESS ]   NXF2B [ SEEK ]   NXF2B [ MEM ]
Gene Expression Viewer (FireBrowse)NXF2B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728343
GTEX Portal (Tissue expression)NXF2B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9GZY0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9GZY0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9GZY0
Splice isoforms : SwissVarQ9GZY0
PhosPhoSitePlusQ9GZY0
Domaine pattern : Prosite (Expaxy)LRR (PS51450)    NTF2_DOMAIN (PS50177)    TAP_C (PS51281)   
Domains : Interpro (EBI)L_dom-like    Leu-rich_rpt    NTF2    NTF2-like_dom    Nuclear_transport_factor_2_euk    Nucleotide-bd_a/b_plait    NXF5    NXF_fam    RRM_dom    TAP_C_dom    Tap_RNA-bd    UBA-like   
Domain families : Pfam (Sanger)NTF2 (PF02136)    Tap-RNA_bind (PF09162)    TAP_C (PF03943)   
Domain families : Pfam (NCBI)pfam02136    pfam09162    pfam03943   
Domain families : Smart (EMBL)TAP_C (SM00804)  
Domain structure : Prodom (Prabi Lyon)Tap_RNA_bd (PD043466)   
Conserved Domain (NCBI)NXF2B
DMDM Disease mutations728343
Blocks (Seattle)NXF2B
SuperfamilyQ9GZY0
Human Protein AtlasENSG00000269437
Peptide AtlasQ9GZY0
Protein Interaction databases
DIP (DOE-UCLA)Q9GZY0
IntAct (EBI)Q9GZY0
FunCoupENSG00000269437
BioGRIDNXF2B
STRING (EMBL)NXF2B
ZODIACNXF2B
Ontologies - Pathways
QuickGOQ9GZY0
Ontology : AmiGORNA binding  protein binding  nucleus  nucleus  nucleoplasm  cytoplasm  cytosol  RNA export from nucleus  mRNA export from nucleus  mRNA export from nucleus  multicellular organism development  poly(A)+ mRNA export from nucleus  nuclear RNA export factor complex  RNA transport  
Ontology : EGO-EBIRNA binding  protein binding  nucleus  nucleus  nucleoplasm  cytoplasm  cytosol  RNA export from nucleus  mRNA export from nucleus  mRNA export from nucleus  multicellular organism development  poly(A)+ mRNA export from nucleus  nuclear RNA export factor complex  RNA transport  
Pathways : KEGGRibosome biogenesis in eukaryotes    RNA transport    mRNA surveillance pathway    Influenza A    Herpes simplex infection   
NDEx NetworkNXF2B
Atlas of Cancer Signalling NetworkNXF2B
Wikipedia pathwaysNXF2B
Orthology - Evolution
OrthoDB728343
GeneTree (enSembl)ENSG00000269437
Phylogenetic Trees/Animal Genes : TreeFamNXF2B
HOVERGENQ9GZY0
HOGENOMQ9GZY0
Homologs : HomoloGeneNXF2B
Homology/Alignments : Family Browser (UCSC)NXF2B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNXF2B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NXF2B
dbVarNXF2B
ClinVarNXF2B
1000_GenomesNXF2B 
Exome Variant ServerNXF2B
ExAC (Exome Aggregation Consortium)NXF2B (select the gene name)
Genetic variants : HAPMAP728343
Genomic Variants (DGV)NXF2B [DGVbeta]
DECIPHERNXF2B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNXF2B 
Mutations
ICGC Data PortalNXF2B 
TCGA Data PortalNXF2B 
Broad Tumor PortalNXF2B
OASIS PortalNXF2B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNXF2B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NXF2B
DgiDB (Drug Gene Interaction Database)NXF2B
DoCM (Curated mutations)NXF2B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NXF2B (select a term)
intoGenNXF2B
Cancer3DNXF2B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNXF2B
Genetic Testing Registry NXF2B
NextProtQ9GZY0 [Medical]
TSGene728343
GENETestsNXF2B
Target ValidationNXF2B
Huge Navigator NXF2B [HugePedia]
snp3D : Map Gene to Disease728343
BioCentury BCIQNXF2B
ClinGenNXF2B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728343
Chemical/Pharm GKB GenePA162398310
Clinical trialNXF2B
Miscellaneous
canSAR (ICR)NXF2B (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNXF2B
EVEXNXF2B
GoPubMedNXF2B
iHOPNXF2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:32:31 CEST 2017

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