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NXF5 (nuclear RNA export factor 5)

Identity

Other alias-
HGNC (Hugo) NXF5
LocusID (NCBI) 55998
Atlas_Id 71063
Location Xq22.1  [Link to chromosome band Xq22]
Location_base_pair Starts at 101832112 and ends at 101857577 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NXF5   8075
Cards
Entrez_Gene (NCBI)NXF5  55998  nuclear RNA export factor 5
Aliases
GeneCards (Weizmann)NXF5
Ensembl hg19 (Hinxton)ENSG00000126952 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000126952 [Gene_View]  chrX:101832112-101857577 [Contig_View]  NXF5 [Vega]
ICGC DataPortalENSG00000126952
TCGA cBioPortalNXF5
AceView (NCBI)NXF5
Genatlas (Paris)NXF5
WikiGenes55998
SOURCE (Princeton)NXF5
Genetics Home Reference (NIH)NXF5
Genomic and cartography
GoldenPath hg38 (UCSC)NXF5  -     chrX:101832112-101857577 -  Xq22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NXF5  -     Xq22.1   [Description]    (hg19-Feb_2009)
EnsemblNXF5 - Xq22.1 [CytoView hg19]  NXF5 - Xq22.1 [CytoView hg38]
Mapping of homologs : NCBINXF5 [Mapview hg19]  NXF5 [Mapview hg38]
OMIM300319   
Gene and transcription
Genbank (Entrez)AJ277654 AJ277655 AJ277656 AJ277657 AJ277658
RefSeq transcript (Entrez)NM_032946 NM_033152 NM_033153 NM_033154 NM_033155
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NXF5
Cluster EST : UnigeneHs.307077 [ NCBI ]
CGAP (NCI)Hs.307077
Alternative Splicing GalleryENSG00000126952
Gene ExpressionNXF5 [ NCBI-GEO ]   NXF5 [ EBI - ARRAY_EXPRESS ]   NXF5 [ SEEK ]   NXF5 [ MEM ]
Gene Expression Viewer (FireBrowse)NXF5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55998
GTEX Portal (Tissue expression)NXF5
Human Protein AtlasENSG00000126952-NXF5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H1B4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H1B4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H1B4
Splice isoforms : SwissVarQ9H1B4
PhosPhoSitePlusQ9H1B4
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)L_dom-like    Leu-rich_rpt    NTF2-like_dom    Nucleotide-bd_a/b_plait    NXF_fam    RRM_dom    Tap_RNA-bd   
Domain families : Pfam (Sanger)Tap-RNA_bind (PF09162)   
Domain families : Pfam (NCBI)pfam09162   
Domain structure : Prodom (Prabi Lyon)Tap_RNA_bd (PD043466)   
Conserved Domain (NCBI)NXF5
DMDM Disease mutations55998
Blocks (Seattle)NXF5
SuperfamilyQ9H1B4
Human Protein Atlas [tissue]ENSG00000126952-NXF5 [tissue]
Peptide AtlasQ9H1B4
HPRD02263
IPIIPI00016809   IPI00220960   IPI00220961   IPI00220962   IPI00012781   IPI00965908   
Protein Interaction databases
DIP (DOE-UCLA)Q9H1B4
IntAct (EBI)Q9H1B4
FunCoupENSG00000126952
BioGRIDNXF5
STRING (EMBL)NXF5
ZODIACNXF5
Ontologies - Pathways
QuickGOQ9H1B4
Ontology : AmiGORNA binding  protein binding  nucleus  cytoplasm  mRNA export from nucleus  multicellular organism development  poly(A)+ mRNA export from nucleus  RNA transport  
Ontology : EGO-EBIRNA binding  protein binding  nucleus  cytoplasm  mRNA export from nucleus  multicellular organism development  poly(A)+ mRNA export from nucleus  RNA transport  
Pathways : KEGGRibosome biogenesis in eukaryotes    RNA transport    mRNA surveillance pathway    Influenza A    Herpes simplex infection   
NDEx NetworkNXF5
Atlas of Cancer Signalling NetworkNXF5
Wikipedia pathwaysNXF5
Orthology - Evolution
OrthoDB55998
GeneTree (enSembl)ENSG00000126952
Phylogenetic Trees/Animal Genes : TreeFamNXF5
HOVERGENQ9H1B4
HOGENOMQ9H1B4
Homologs : HomoloGeneNXF5
Homology/Alignments : Family Browser (UCSC)NXF5
Gene fusions - Rearrangements
Tumor Fusion PortalNXF5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNXF5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NXF5
dbVarNXF5
ClinVarNXF5
1000_GenomesNXF5 
Exome Variant ServerNXF5
ExAC (Exome Aggregation Consortium)ENSG00000126952
GNOMAD BrowserENSG00000126952
Genetic variants : HAPMAP55998
Genomic Variants (DGV)NXF5 [DGVbeta]
DECIPHERNXF5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNXF5 
Mutations
ICGC Data PortalNXF5 
TCGA Data PortalNXF5 
Broad Tumor PortalNXF5
OASIS PortalNXF5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNXF5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNXF5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch NXF5
DgiDB (Drug Gene Interaction Database)NXF5
DoCM (Curated mutations)NXF5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NXF5 (select a term)
intoGenNXF5
Cancer3DNXF5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300319   
Orphanet
DisGeNETNXF5
MedgenNXF5
Genetic Testing Registry NXF5
NextProtQ9H1B4 [Medical]
TSGene55998
GENETestsNXF5
Target ValidationNXF5
Huge Navigator NXF5 [HugePedia]
snp3D : Map Gene to Disease55998
BioCentury BCIQNXF5
ClinGenNXF5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55998
Chemical/Pharm GKB GenePA31862
Clinical trialNXF5
Miscellaneous
canSAR (ICR)NXF5 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNXF5
EVEXNXF5
GoPubMedNXF5
iHOPNXF5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:00:16 CET 2017

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