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NXNL1 (nucleoredoxin-like 1)

Identity

Alias_namesTXNL6
thioredoxin-like 6
Alias_symbol (synonym)RDCVF
Other alias
HGNC (Hugo) NXNL1
LocusID (NCBI) 115861
Atlas_Id 52203
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 17455425 and ends at 17460916 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NXNL1   25179
Cards
Entrez_Gene (NCBI)NXNL1  115861  nucleoredoxin-like 1
AliasesRDCVF; TXNL6
GeneCards (Weizmann)NXNL1
Ensembl hg19 (Hinxton)ENSG00000171773 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171773 [Gene_View]  chr19:17455425-17460916 [Contig_View]  NXNL1 [Vega]
ICGC DataPortalENSG00000171773
TCGA cBioPortalNXNL1
AceView (NCBI)NXNL1
Genatlas (Paris)NXNL1
WikiGenes115861
SOURCE (Princeton)NXNL1
Genetics Home Reference (NIH)NXNL1
Genomic and cartography
GoldenPath hg38 (UCSC)NXNL1  -     chr19:17455425-17460916 -  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NXNL1  -     19p13.11   [Description]    (hg19-Feb_2009)
EnsemblNXNL1 - 19p13.11 [CytoView hg19]  NXNL1 - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBINXNL1 [Mapview hg19]  NXNL1 [Mapview hg38]
OMIM608791   
Gene and transcription
Genbank (Entrez)BC014127 DQ426894 HQ448672
RefSeq transcript (Entrez)NM_138454
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NXNL1
Cluster EST : UnigeneHs.661836 [ NCBI ]
CGAP (NCI)Hs.661836
Alternative Splicing GalleryENSG00000171773
Gene ExpressionNXNL1 [ NCBI-GEO ]   NXNL1 [ EBI - ARRAY_EXPRESS ]   NXNL1 [ SEEK ]   NXNL1 [ MEM ]
Gene Expression Viewer (FireBrowse)NXNL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)115861
GTEX Portal (Tissue expression)NXNL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96CM4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96CM4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96CM4
Splice isoforms : SwissVarQ96CM4
PhosPhoSitePlusQ96CM4
Domaine pattern : Prosite (Expaxy)THIOREDOXIN_2 (PS51352)   
Domains : Interpro (EBI)RdCVF    Thioredoxin-like_fold    Thioredoxin_domain   
Domain families : Pfam (Sanger)Thioredoxin_8 (PF13905)   
Domain families : Pfam (NCBI)pfam13905   
Conserved Domain (NCBI)NXNL1
DMDM Disease mutations115861
Blocks (Seattle)NXNL1
SuperfamilyQ96CM4
Human Protein AtlasENSG00000171773
Peptide AtlasQ96CM4
HPRD12300
IPIIPI00060459   
Protein Interaction databases
DIP (DOE-UCLA)Q96CM4
IntAct (EBI)Q96CM4
FunCoupENSG00000171773
BioGRIDNXNL1
STRING (EMBL)NXNL1
ZODIACNXNL1
Ontologies - Pathways
QuickGOQ96CM4
Ontology : AmiGOthioredoxin-disulfide reductase activity  nuclear outer membrane  cytoplasm  mitochondrion  cell redox homeostasis  photoreceptor cell maintenance  cellular oxidant detoxification  
Ontology : EGO-EBIthioredoxin-disulfide reductase activity  nuclear outer membrane  cytoplasm  mitochondrion  cell redox homeostasis  photoreceptor cell maintenance  cellular oxidant detoxification  
NDEx NetworkNXNL1
Atlas of Cancer Signalling NetworkNXNL1
Wikipedia pathwaysNXNL1
Orthology - Evolution
OrthoDB115861
GeneTree (enSembl)ENSG00000171773
Phylogenetic Trees/Animal Genes : TreeFamNXNL1
HOVERGENQ96CM4
HOGENOMQ96CM4
Homologs : HomoloGeneNXNL1
Homology/Alignments : Family Browser (UCSC)NXNL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNXNL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NXNL1
dbVarNXNL1
ClinVarNXNL1
1000_GenomesNXNL1 
Exome Variant ServerNXNL1
ExAC (Exome Aggregation Consortium)NXNL1 (select the gene name)
Genetic variants : HAPMAP115861
Genomic Variants (DGV)NXNL1 [DGVbeta]
DECIPHERNXNL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNXNL1 
Mutations
ICGC Data PortalNXNL1 
TCGA Data PortalNXNL1 
Broad Tumor PortalNXNL1
OASIS PortalNXNL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNXNL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNXNL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NXNL1
DgiDB (Drug Gene Interaction Database)NXNL1
DoCM (Curated mutations)NXNL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NXNL1 (select a term)
intoGenNXNL1
Cancer3DNXNL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608791   
Orphanet
MedgenNXNL1
Genetic Testing Registry NXNL1
NextProtQ96CM4 [Medical]
TSGene115861
GENETestsNXNL1
Target ValidationNXNL1
Huge Navigator NXNL1 [HugePedia]
snp3D : Map Gene to Disease115861
BioCentury BCIQNXNL1
ClinGenNXNL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD115861
Chemical/Pharm GKB GenePA162398383
Clinical trialNXNL1
Miscellaneous
canSAR (ICR)NXNL1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNXNL1
EVEXNXNL1
GoPubMedNXNL1
iHOPNXNL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:23:01 CEST 2017

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