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NXNL1 (nucleoredoxin like 1)

Identity

Alias (NCBI)RDCVF
TXNL6
HGNC (Hugo) NXNL1
HGNC Alias symbRDCVF
HGNC Alias namerod-derived cone viability factor
HGNC Previous nameTXNL6
HGNC Previous namethioredoxin-like 6
LocusID (NCBI) 115861
Atlas_Id 52203
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 17455425 and ends at 17460926 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)NXNL1   25179
Cards
Entrez_Gene (NCBI)NXNL1    nucleoredoxin like 1
AliasesRDCVF; TXNL6
GeneCards (Weizmann)NXNL1
Ensembl hg19 (Hinxton)ENSG00000171773 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171773 [Gene_View]  ENSG00000171773 [Sequence]  chr19:17455425-17460926 [Contig_View]  NXNL1 [Vega]
ICGC DataPortalENSG00000171773
TCGA cBioPortalNXNL1
AceView (NCBI)NXNL1
Genatlas (Paris)NXNL1
SOURCE (Princeton)NXNL1
Genetics Home Reference (NIH)NXNL1
Genomic and cartography
GoldenPath hg38 (UCSC)NXNL1  -     chr19:17455425-17460926 -  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NXNL1  -     19p13.11   [Description]    (hg19-Feb_2009)
GoldenPathNXNL1 - 19p13.11 [CytoView hg19]  NXNL1 - 19p13.11 [CytoView hg38]
ImmunoBaseENSG00000171773
Genome Data Viewer NCBINXNL1 [Mapview hg19]  
OMIM608791   
Gene and transcription
Genbank (Entrez)BC014127 DQ426894
RefSeq transcript (Entrez)NM_138454
Consensus coding sequences : CCDS (NCBI)NXNL1
Gene ExpressionNXNL1 [ NCBI-GEO ]   NXNL1 [ EBI - ARRAY_EXPRESS ]   NXNL1 [ SEEK ]   NXNL1 [ MEM ]
Gene Expression Viewer (FireBrowse)NXNL1 [ Firebrowse - Broad ]
GenevisibleExpression of NXNL1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)115861
GTEX Portal (Tissue expression)NXNL1
Human Protein AtlasENSG00000171773-NXNL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96CM4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96CM4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96CM4
PhosPhoSitePlusQ96CM4
Domaine pattern : Prosite (Expaxy)THIOREDOXIN_2 (PS51352)   
Domains : Interpro (EBI)RdCVF    Thioredoxin-like_fold    Thioredoxin-like_sf    Thioredoxin_domain   
Domain families : Pfam (Sanger)Thioredoxin_8 (PF13905)   
Domain families : Pfam (NCBI)pfam13905   
Conserved Domain (NCBI)NXNL1
SuperfamilyQ96CM4
AlphaFold pdb e-kbQ96CM4   
Human Protein Atlas [tissue]ENSG00000171773-NXNL1 [tissue]
HPRD12300
Protein Interaction databases
DIP (DOE-UCLA)Q96CM4
IntAct (EBI)Q96CM4
BioGRIDNXNL1
STRING (EMBL)NXNL1
ZODIACNXNL1
Ontologies - Pathways
QuickGOQ96CM4
Ontology : AmiGOphotoreceptor outer segment  protein binding  photoreceptor cell maintenance  
Ontology : EGO-EBIphotoreceptor outer segment  protein binding  photoreceptor cell maintenance  
NDEx NetworkNXNL1
Atlas of Cancer Signalling NetworkNXNL1
Wikipedia pathwaysNXNL1
Orthology - Evolution
OrthoDB115861
GeneTree (enSembl)ENSG00000171773
Phylogenetic Trees/Animal Genes : TreeFamNXNL1
Homologs : HomoloGeneNXNL1
Homology/Alignments : Family Browser (UCSC)NXNL1
Gene fusions - Rearrangements
Fusion : QuiverNXNL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNXNL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NXNL1
dbVarNXNL1
ClinVarNXNL1
MonarchNXNL1
1000_GenomesNXNL1 
Exome Variant ServerNXNL1
GNOMAD BrowserENSG00000171773
Varsome BrowserNXNL1
ACMGNXNL1 variants
VarityQ96CM4
Genomic Variants (DGV)NXNL1 [DGVbeta]
DECIPHERNXNL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNXNL1 
Mutations
ICGC Data PortalNXNL1 
TCGA Data PortalNXNL1 
Broad Tumor PortalNXNL1
OASIS PortalNXNL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNXNL1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNXNL1
Mutations and Diseases : HGMDNXNL1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaNXNL1
DgiDB (Drug Gene Interaction Database)NXNL1
DoCM (Curated mutations)NXNL1
CIViC (Clinical Interpretations of Variants in Cancer)NXNL1
Cancer3DNXNL1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608791   
Orphanet
DisGeNETNXNL1
MedgenNXNL1
Genetic Testing Registry NXNL1
NextProtQ96CM4 [Medical]
GENETestsNXNL1
Target ValidationNXNL1
Huge Navigator NXNL1 [HugePedia]
ClinGenNXNL1
Clinical trials, drugs, therapy
MyCancerGenomeNXNL1
Protein Interactions : CTDNXNL1
Pharm GKB GenePA162398383
PharosQ96CM4
Clinical trialNXNL1
Miscellaneous
canSAR (ICR)NXNL1
HarmonizomeNXNL1
DataMed IndexNXNL1
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXNXNL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:23:36 CEST 2021

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