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NXNL2 (nucleoredoxin-like 2)

Identity

Alias_namesC9orf121
chromosome 9 open reading frame 121
Other aliasRDCVF2
HGNC (Hugo) NXNL2
LocusID (NCBI) 158046
Atlas_Id 71065
Location 9q22.1  [Link to chromosome band 9q22]
Location_base_pair Starts at 88535101 and ends at 88544547 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HS2ST1 (1p22.3) / NXNL2 (9q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NXNL2   30482
Cards
Entrez_Gene (NCBI)NXNL2  158046  nucleoredoxin-like 2
AliasesC9orf121; RDCVF2
GeneCards (Weizmann)NXNL2
Ensembl hg19 (Hinxton)ENSG00000130045 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130045 [Gene_View]  chr9:88535101-88544547 [Contig_View]  NXNL2 [Vega]
ICGC DataPortalENSG00000130045
TCGA cBioPortalNXNL2
AceView (NCBI)NXNL2
Genatlas (Paris)NXNL2
WikiGenes158046
SOURCE (Princeton)NXNL2
Genetics Home Reference (NIH)NXNL2
Genomic and cartography
GoldenPath hg38 (UCSC)NXNL2  -     chr9:88535101-88544547 +  9q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NXNL2  -     9q22.1   [Description]    (hg19-Feb_2009)
EnsemblNXNL2 - 9q22.1 [CytoView hg19]  NXNL2 - 9q22.1 [CytoView hg38]
Mapping of homologs : NCBINXNL2 [Mapview hg19]  NXNL2 [Mapview hg38]
OMIM615299   
Gene and transcription
Genbank (Entrez)BC022521 BI517442 JF432774
RefSeq transcript (Entrez)NM_001161625 NM_145283
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NXNL2
Cluster EST : UnigeneHs.734507 [ NCBI ]
CGAP (NCI)Hs.734507
Alternative Splicing GalleryENSG00000130045
Gene ExpressionNXNL2 [ NCBI-GEO ]   NXNL2 [ EBI - ARRAY_EXPRESS ]   NXNL2 [ SEEK ]   NXNL2 [ MEM ]
Gene Expression Viewer (FireBrowse)NXNL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)158046
GTEX Portal (Tissue expression)NXNL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VZ03   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VZ03  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VZ03
Splice isoforms : SwissVarQ5VZ03
PhosPhoSitePlusQ5VZ03
Domains : Interpro (EBI)RdCVF2    Thioredoxin-like_fold   
Domain families : Pfam (Sanger)Thioredoxin_8 (PF13905)   
Domain families : Pfam (NCBI)pfam13905   
Conserved Domain (NCBI)NXNL2
DMDM Disease mutations158046
Blocks (Seattle)NXNL2
SuperfamilyQ5VZ03
Human Protein AtlasENSG00000130045
Peptide AtlasQ5VZ03
HPRD12938
IPIIPI00478223   IPI00889706   
Protein Interaction databases
DIP (DOE-UCLA)Q5VZ03
IntAct (EBI)Q5VZ03
FunCoupENSG00000130045
BioGRIDNXNL2
STRING (EMBL)NXNL2
ZODIACNXNL2
Ontologies - Pathways
QuickGOQ5VZ03
Ontology : AmiGOthioredoxin-disulfide reductase activity  cytoplasm  visual perception  sensory perception of smell  photoreceptor cell maintenance  cellular oxidant detoxification  
Ontology : EGO-EBIthioredoxin-disulfide reductase activity  cytoplasm  visual perception  sensory perception of smell  photoreceptor cell maintenance  cellular oxidant detoxification  
NDEx NetworkNXNL2
Atlas of Cancer Signalling NetworkNXNL2
Wikipedia pathwaysNXNL2
Orthology - Evolution
OrthoDB158046
GeneTree (enSembl)ENSG00000130045
Phylogenetic Trees/Animal Genes : TreeFamNXNL2
HOVERGENQ5VZ03
HOGENOMQ5VZ03
Homologs : HomoloGeneNXNL2
Homology/Alignments : Family Browser (UCSC)NXNL2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNXNL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NXNL2
dbVarNXNL2
ClinVarNXNL2
1000_GenomesNXNL2 
Exome Variant ServerNXNL2
ExAC (Exome Aggregation Consortium)NXNL2 (select the gene name)
Genetic variants : HAPMAP158046
Genomic Variants (DGV)NXNL2 [DGVbeta]
DECIPHERNXNL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNXNL2 
Mutations
ICGC Data PortalNXNL2 
TCGA Data PortalNXNL2 
Broad Tumor PortalNXNL2
OASIS PortalNXNL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNXNL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNXNL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NXNL2
DgiDB (Drug Gene Interaction Database)NXNL2
DoCM (Curated mutations)NXNL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NXNL2 (select a term)
intoGenNXNL2
Cancer3DNXNL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615299   
Orphanet
MedgenNXNL2
Genetic Testing Registry NXNL2
NextProtQ5VZ03 [Medical]
TSGene158046
GENETestsNXNL2
Target ValidationNXNL2
Huge Navigator NXNL2 [HugePedia]
snp3D : Map Gene to Disease158046
BioCentury BCIQNXNL2
ClinGenNXNL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD158046
Chemical/Pharm GKB GenePA162398384
Clinical trialNXNL2
Miscellaneous
canSAR (ICR)NXNL2 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNXNL2
EVEXNXNL2
GoPubMedNXNL2
iHOPNXNL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:32:31 CEST 2017

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