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NXNL2 (nucleoredoxin like 2)

Identity

Alias (NCBI)C9orf121
RDCVF2
RdCVF2L
HGNC (Hugo) NXNL2
HGNC Previous nameC9orf121
HGNC Previous namechromosome 9 open reading frame 121
LocusID (NCBI) 158046
Atlas_Id 71065
Location 9q22.1  [Link to chromosome band 9q22]
Location_base_pair Starts at 88535178 and ends at 88575793 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HS2ST1 (1p22.3) / NXNL2 (9q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)NXNL2   30482
Cards
Entrez_Gene (NCBI)NXNL2    nucleoredoxin like 2
AliasesC9orf121; RDCVF2; RdCVF2L
GeneCards (Weizmann)NXNL2
Ensembl hg19 (Hinxton)ENSG00000130045 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130045 [Gene_View]  ENSG00000130045 [Sequence]  chr9:88535178-88575793 [Contig_View]  NXNL2 [Vega]
ICGC DataPortalENSG00000130045
TCGA cBioPortalNXNL2
AceView (NCBI)NXNL2
Genatlas (Paris)NXNL2
SOURCE (Princeton)NXNL2
Genetics Home Reference (NIH)NXNL2
Genomic and cartography
GoldenPath hg38 (UCSC)NXNL2  -     chr9:88535178-88575793 +  9q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NXNL2  -     9q22.1   [Description]    (hg19-Feb_2009)
GoldenPathNXNL2 - 9q22.1 [CytoView hg19]  NXNL2 - 9q22.1 [CytoView hg38]
ImmunoBaseENSG00000130045
Genome Data Viewer NCBINXNL2 [Mapview hg19]  
OMIM615299   
Gene and transcription
Genbank (Entrez)BC022521 BI517442
RefSeq transcript (Entrez)NM_001161625 NM_145283
Consensus coding sequences : CCDS (NCBI)NXNL2
Gene ExpressionNXNL2 [ NCBI-GEO ]   NXNL2 [ EBI - ARRAY_EXPRESS ]   NXNL2 [ SEEK ]   NXNL2 [ MEM ]
Gene Expression Viewer (FireBrowse)NXNL2 [ Firebrowse - Broad ]
GenevisibleExpression of NXNL2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)158046
GTEX Portal (Tissue expression)NXNL2
Human Protein AtlasENSG00000130045-NXNL2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VZ03   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VZ03  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VZ03
PhosPhoSitePlusQ5VZ03
Domains : Interpro (EBI)RdCVF2    Thioredoxin-like_fold    Thioredoxin-like_sf   
Domain families : Pfam (Sanger)Thioredoxin_8 (PF13905)   
Domain families : Pfam (NCBI)pfam13905   
Conserved Domain (NCBI)NXNL2
SuperfamilyQ5VZ03
AlphaFold pdb e-kbQ5VZ03   
Human Protein Atlas [tissue]ENSG00000130045-NXNL2 [tissue]
HPRD12938
Protein Interaction databases
DIP (DOE-UCLA)Q5VZ03
IntAct (EBI)Q5VZ03
BioGRIDNXNL2
STRING (EMBL)NXNL2
ZODIACNXNL2
Ontologies - Pathways
QuickGOQ5VZ03
Ontology : AmiGOsensory perception  photoreceptor cell maintenance  
Ontology : EGO-EBIsensory perception  photoreceptor cell maintenance  
NDEx NetworkNXNL2
Atlas of Cancer Signalling NetworkNXNL2
Wikipedia pathwaysNXNL2
Orthology - Evolution
OrthoDB158046
GeneTree (enSembl)ENSG00000130045
Phylogenetic Trees/Animal Genes : TreeFamNXNL2
Homologs : HomoloGeneNXNL2
Homology/Alignments : Family Browser (UCSC)NXNL2
Gene fusions - Rearrangements
Fusion : QuiverNXNL2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNXNL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NXNL2
dbVarNXNL2
ClinVarNXNL2
MonarchNXNL2
1000_GenomesNXNL2 
Exome Variant ServerNXNL2
GNOMAD BrowserENSG00000130045
Varsome BrowserNXNL2
ACMGNXNL2 variants
VarityQ5VZ03
Genomic Variants (DGV)NXNL2 [DGVbeta]
DECIPHERNXNL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNXNL2 
Mutations
ICGC Data PortalNXNL2 
TCGA Data PortalNXNL2 
Broad Tumor PortalNXNL2
OASIS PortalNXNL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNXNL2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNXNL2
Mutations and Diseases : HGMDNXNL2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaNXNL2
DgiDB (Drug Gene Interaction Database)NXNL2
DoCM (Curated mutations)NXNL2
CIViC (Clinical Interpretations of Variants in Cancer)NXNL2
Cancer3DNXNL2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615299   
Orphanet
DisGeNETNXNL2
MedgenNXNL2
Genetic Testing Registry NXNL2
NextProtQ5VZ03 [Medical]
GENETestsNXNL2
Target ValidationNXNL2
Huge Navigator NXNL2 [HugePedia]
ClinGenNXNL2
Clinical trials, drugs, therapy
MyCancerGenomeNXNL2
Protein Interactions : CTDNXNL2
Pharm GKB GenePA162398384
PharosQ5VZ03
Clinical trialNXNL2
Miscellaneous
canSAR (ICR)NXNL2
HarmonizomeNXNL2
DataMed IndexNXNL2
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXNXNL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:13:25 CEST 2021

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