Atlas of Genetics and Cytogenetics in Oncology and Haematology

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NXPE2 (neurexophilin and PC-esterase domain family member 2)

Identity

Alias (NCBI)FAM55B
HGNC (Hugo) NXPE2
HGNC Alias symbFLJ25224
HGNC Previous nameFAM55B
HGNC Previous namefamily with sequence similarity 55, member B
 neurexophilin and PC-esterase domain family, member 2
LocusID (NCBI) 120406
Atlas_Id 71067
Location 11q23.3  [Link to chromosome band 11q23]
Location_base_pair Starts at 114678478 and ends at 114706930 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)NXPE2   26331
Cards
Entrez_Gene (NCBI)NXPE2    neurexophilin and PC-esterase domain family member 2
AliasesFAM55B
GeneCards (Weizmann)NXPE2
Ensembl hg19 (Hinxton)ENSG00000204361 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204361 [Gene_View]  ENSG00000204361 [Sequence]  chr11:114678478-114706930 [Contig_View]  NXPE2 [Vega]
ICGC DataPortalENSG00000204361
TCGA cBioPortalNXPE2
AceView (NCBI)NXPE2
Genatlas (Paris)NXPE2
SOURCE (Princeton)NXPE2
Genetics Home Reference (NIH)NXPE2
Genomic and cartography
GoldenPath hg38 (UCSC)NXPE2  -     chr11:114678478-114706930 +  11q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NXPE2  -     11q23.3   [Description]    (hg19-Feb_2009)
GoldenPathNXPE2 - 11q23.3 [CytoView hg19]  NXPE2 - 11q23.3 [CytoView hg38]
ImmunoBaseENSG00000204361
genome Data Viewer NCBINXPE2 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK057953 BC111797
RefSeq transcript (Entrez)NM_182495
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NXPE2
Alternative Splicing GalleryENSG00000204361
Gene ExpressionNXPE2 [ NCBI-GEO ]   NXPE2 [ EBI - ARRAY_EXPRESS ]   NXPE2 [ SEEK ]   NXPE2 [ MEM ]
Gene Expression Viewer (FireBrowse)NXPE2 [ Firebrowse - Broad ]
GenevisibleExpression of NXPE2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)120406
GTEX Portal (Tissue expression)NXPE2
Human Protein AtlasENSG00000204361-NXPE2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96DL1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96DL1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96DL1
Splice isoforms : SwissVarQ96DL1
PhosPhoSitePlusQ96DL1
Domains : Interpro (EBI)Ig-like_fold    Ig_E-set    NXPH/NXPE   
Domain families : Pfam (Sanger)Neurexophilin (PF06312)   
Domain families : Pfam (NCBI)pfam06312   
Conserved Domain (NCBI)NXPE2
Blocks (Seattle)NXPE2
SuperfamilyQ96DL1
Human Protein Atlas [tissue]ENSG00000204361-NXPE2 [tissue]
Peptide AtlasQ96DL1
HPRD08055
IPIIPI00783563   IPI00060969   IPI01015857   
Protein Interaction databases
DIP (DOE-UCLA)Q96DL1
IntAct (EBI)Q96DL1
BioGRIDNXPE2
STRING (EMBL)NXPE2
ZODIACNXPE2
Ontologies - Pathways
QuickGOQ96DL1
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkNXPE2
Atlas of Cancer Signalling NetworkNXPE2
Wikipedia pathwaysNXPE2
Orthology - Evolution
OrthoDB120406
GeneTree (enSembl)ENSG00000204361
Phylogenetic Trees/Animal Genes : TreeFamNXPE2
HOGENOMQ96DL1
Homologs : HomoloGeneNXPE2
Homology/Alignments : Family Browser (UCSC)NXPE2
Gene fusions - Rearrangements
Fusion : QuiverNXPE2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNXPE2 [hg38]
dbVarNXPE2
ClinVarNXPE2
MonarchNXPE2
1000_GenomesNXPE2 
Exome Variant ServerNXPE2
GNOMAD BrowserENSG00000204361
Varsome BrowserNXPE2
Genomic Variants (DGV)NXPE2 [DGVbeta]
DECIPHERNXPE2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNXPE2 
Mutations
ICGC Data PortalNXPE2 
TCGA Data PortalNXPE2 
Broad Tumor PortalNXPE2
OASIS PortalNXPE2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNXPE2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNXPE2
Mutations and Diseases : HGMDNXPE2
BioMutasearch NXPE2
DgiDB (Drug Gene Interaction Database)NXPE2
DoCM (Curated mutations)NXPE2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NXPE2 (select a term)
intoGenNXPE2
Cancer3DNXPE2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETNXPE2
MedgenNXPE2
Genetic Testing Registry NXPE2
NextProtQ96DL1 [Medical]
GENETestsNXPE2
Target ValidationNXPE2
Huge Navigator NXPE2 [HugePedia]
ClinGenNXPE2
Clinical trials, drugs, therapy
MyCancerGenomeNXPE2
Protein Interactions : CTD
Pharm GKB GenePA134861439
Clinical trialNXPE2
Miscellaneous
canSAR (ICR)NXPE2 (select the gene name)
HarmonizomeNXPE2
DataMed IndexNXPE2
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNXPE2
EVEXNXPE2
GoPubMedNXPE2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:19:47 CET 2020
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