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NXPE4 (neurexophilin and PC-esterase domain family member 4)

Identity

Alias_namesC11orf33
FAM55D
chromosome 11 open reading frame 33
family with sequence similarity 55, member D
neurexophilin and PC-esterase domain family, member 4
Alias_symbol (synonym)FLJ20127
Other alias
HGNC (Hugo) NXPE4
LocusID (NCBI) 54827
Atlas_Id 71069
Location 11q23.2  [Link to chromosome band 11q23]
Location_base_pair Starts at 114570591 and ends at 114595762 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NXPE4   23117
Cards
Entrez_Gene (NCBI)NXPE4  54827  neurexophilin and PC-esterase domain family member 4
AliasesC11orf33; FAM55D
GeneCards (Weizmann)NXPE4
Ensembl hg19 (Hinxton)ENSG00000137634 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137634 [Gene_View]  chr11:114570591-114595762 [Contig_View]  NXPE4 [Vega]
ICGC DataPortalENSG00000137634
TCGA cBioPortalNXPE4
AceView (NCBI)NXPE4
Genatlas (Paris)NXPE4
WikiGenes54827
SOURCE (Princeton)NXPE4
Genetics Home Reference (NIH)NXPE4
Genomic and cartography
GoldenPath hg38 (UCSC)NXPE4  -     chr11:114570591-114595762 -  11q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NXPE4  -     11q23.2   [Description]    (hg19-Feb_2009)
EnsemblNXPE4 - 11q23.2 [CytoView hg19]  NXPE4 - 11q23.2 [CytoView hg38]
Mapping of homologs : NCBINXPE4 [Mapview hg19]  NXPE4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000134 AK225236 AY358805 AY547307 DA428771
RefSeq transcript (Entrez)NM_001077639 NM_017678
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NXPE4
Cluster EST : UnigeneHs.179100 [ NCBI ]
CGAP (NCI)Hs.179100
Alternative Splicing GalleryENSG00000137634
Gene ExpressionNXPE4 [ NCBI-GEO ]   NXPE4 [ EBI - ARRAY_EXPRESS ]   NXPE4 [ SEEK ]   NXPE4 [ MEM ]
Gene Expression Viewer (FireBrowse)NXPE4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54827
GTEX Portal (Tissue expression)NXPE4
Human Protein AtlasENSG00000137634-NXPE4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UWF7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UWF7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UWF7
Splice isoforms : SwissVarQ6UWF7
PhosPhoSitePlusQ6UWF7
Domains : Interpro (EBI)Ig-like_fold    Ig_E-set    NXPH/NXPE   
Domain families : Pfam (Sanger)Neurexophilin (PF06312)   
Domain families : Pfam (NCBI)pfam06312   
Conserved Domain (NCBI)NXPE4
DMDM Disease mutations54827
Blocks (Seattle)NXPE4
SuperfamilyQ6UWF7
Human Protein Atlas [tissue]ENSG00000137634-NXPE4 [tissue]
Peptide AtlasQ6UWF7
HPRD12607
IPIIPI00014920   IPI00607672   
Protein Interaction databases
DIP (DOE-UCLA)Q6UWF7
IntAct (EBI)Q6UWF7
FunCoupENSG00000137634
BioGRIDNXPE4
STRING (EMBL)NXPE4
ZODIACNXPE4
Ontologies - Pathways
QuickGOQ6UWF7
Ontology : AmiGOmolecular_function  biological_process  extracellular exosome  
Ontology : EGO-EBImolecular_function  biological_process  extracellular exosome  
NDEx NetworkNXPE4
Atlas of Cancer Signalling NetworkNXPE4
Wikipedia pathwaysNXPE4
Orthology - Evolution
OrthoDB54827
GeneTree (enSembl)ENSG00000137634
Phylogenetic Trees/Animal Genes : TreeFamNXPE4
HOVERGENQ6UWF7
HOGENOMQ6UWF7
Homologs : HomoloGeneNXPE4
Homology/Alignments : Family Browser (UCSC)NXPE4
Gene fusions - Rearrangements
Fusion: Tumor Portal NXPE4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNXPE4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NXPE4
dbVarNXPE4
ClinVarNXPE4
1000_GenomesNXPE4 
Exome Variant ServerNXPE4
ExAC (Exome Aggregation Consortium)ENSG00000137634
GNOMAD BrowserENSG00000137634
Genetic variants : HAPMAP54827
Genomic Variants (DGV)NXPE4 [DGVbeta]
DECIPHERNXPE4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNXPE4 
Mutations
ICGC Data PortalNXPE4 
TCGA Data PortalNXPE4 
Broad Tumor PortalNXPE4
OASIS PortalNXPE4 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNXPE4
BioMutasearch NXPE4
DgiDB (Drug Gene Interaction Database)NXPE4
DoCM (Curated mutations)NXPE4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NXPE4 (select a term)
intoGenNXPE4
Cancer3DNXPE4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNXPE4
Genetic Testing Registry NXPE4
NextProtQ6UWF7 [Medical]
TSGene54827
GENETestsNXPE4
Target ValidationNXPE4
Huge Navigator NXPE4 [HugePedia]
snp3D : Map Gene to Disease54827
BioCentury BCIQNXPE4
ClinGenNXPE4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54827
Chemical/Pharm GKB GenePA134871713
Clinical trialNXPE4
Miscellaneous
canSAR (ICR)NXPE4 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNXPE4
EVEXNXPE4
GoPubMedNXPE4
iHOPNXPE4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:19:42 CET 2017

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