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NXPH1 (neurexophilin 1)

Identity

Other aliasNPH1
Nbla00697
HGNC (Hugo) NXPH1
LocusID (NCBI) 30010
Atlas_Id 53264
Location 7p21.3  [Link to chromosome band 7p21]
Location_base_pair Starts at 8433955 and ends at 8752963 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MYLK (3q21.1) / NXPH1 (7p21.3)MYLK 3q21.1 / NXPH1 7p21.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NXPH1   20693
Cards
Entrez_Gene (NCBI)NXPH1  30010  neurexophilin 1
AliasesNPH1; Nbla00697
GeneCards (Weizmann)NXPH1
Ensembl hg19 (Hinxton)ENSG00000122584 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122584 [Gene_View]  chr7:8433955-8752963 [Contig_View]  NXPH1 [Vega]
ICGC DataPortalENSG00000122584
TCGA cBioPortalNXPH1
AceView (NCBI)NXPH1
Genatlas (Paris)NXPH1
WikiGenes30010
SOURCE (Princeton)NXPH1
Genetics Home Reference (NIH)NXPH1
Genomic and cartography
GoldenPath hg38 (UCSC)NXPH1  -     chr7:8433955-8752963 +  7p21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NXPH1  -     7p21.3   [Description]    (hg19-Feb_2009)
EnsemblNXPH1 - 7p21.3 [CytoView hg19]  NXPH1 - 7p21.3 [CytoView hg38]
Mapping of homologs : NCBINXPH1 [Mapview hg19]  NXPH1 [Mapview hg38]
OMIM604639   
Gene and transcription
Genbank (Entrez)AA575925 AB047362 AB073665 AK091655 AK095624
RefSeq transcript (Entrez)NM_152745
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NXPH1
Cluster EST : UnigeneHs.487564 [ NCBI ]
CGAP (NCI)Hs.487564
Alternative Splicing GalleryENSG00000122584
Gene ExpressionNXPH1 [ NCBI-GEO ]   NXPH1 [ EBI - ARRAY_EXPRESS ]   NXPH1 [ SEEK ]   NXPH1 [ MEM ]
Gene Expression Viewer (FireBrowse)NXPH1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)30010
GTEX Portal (Tissue expression)NXPH1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP58417   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP58417  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP58417
Splice isoforms : SwissVarP58417
PhosPhoSitePlusP58417
Domains : Interpro (EBI)Nxph    NXPH/NXPE   
Domain families : Pfam (Sanger)Neurexophilin (PF06312)   
Domain families : Pfam (NCBI)pfam06312   
Conserved Domain (NCBI)NXPH1
DMDM Disease mutations30010
Blocks (Seattle)NXPH1
SuperfamilyP58417
Human Protein AtlasENSG00000122584
Peptide AtlasP58417
HPRD06867
IPIIPI00048230   IPI01012327   IPI00893005   IPI00892640   
Protein Interaction databases
DIP (DOE-UCLA)P58417
IntAct (EBI)P58417
FunCoupENSG00000122584
BioGRIDNXPH1
STRING (EMBL)NXPH1
ZODIACNXPH1
Ontologies - Pathways
QuickGOP58417
Ontology : AmiGOreceptor binding  extracellular region  
Ontology : EGO-EBIreceptor binding  extracellular region  
NDEx NetworkNXPH1
Atlas of Cancer Signalling NetworkNXPH1
Wikipedia pathwaysNXPH1
Orthology - Evolution
OrthoDB30010
GeneTree (enSembl)ENSG00000122584
Phylogenetic Trees/Animal Genes : TreeFamNXPH1
HOVERGENP58417
HOGENOMP58417
Homologs : HomoloGeneNXPH1
Homology/Alignments : Family Browser (UCSC)NXPH1
Gene fusions - Rearrangements
Fusion : MitelmanMYLK/NXPH1 [3q21.1/7p21.3]  [t(3;7)(q21;p21)]  
Fusion: TCGAMYLK 3q21.1 NXPH1 7p21.3 KIRC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNXPH1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NXPH1
dbVarNXPH1
ClinVarNXPH1
1000_GenomesNXPH1 
Exome Variant ServerNXPH1
ExAC (Exome Aggregation Consortium)NXPH1 (select the gene name)
Genetic variants : HAPMAP30010
Genomic Variants (DGV)NXPH1 [DGVbeta]
DECIPHERNXPH1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNXPH1 
Mutations
ICGC Data PortalNXPH1 
TCGA Data PortalNXPH1 
Broad Tumor PortalNXPH1
OASIS PortalNXPH1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNXPH1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNXPH1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NXPH1
DgiDB (Drug Gene Interaction Database)NXPH1
DoCM (Curated mutations)NXPH1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NXPH1 (select a term)
intoGenNXPH1
Cancer3DNXPH1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604639   
Orphanet
MedgenNXPH1
Genetic Testing Registry NXPH1
NextProtP58417 [Medical]
TSGene30010
GENETestsNXPH1
Target ValidationNXPH1
Huge Navigator NXPH1 [HugePedia]
snp3D : Map Gene to Disease30010
BioCentury BCIQNXPH1
ClinGenNXPH1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD30010
Chemical/Pharm GKB GenePA134961263
Clinical trialNXPH1
Miscellaneous
canSAR (ICR)NXPH1 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNXPH1
EVEXNXPH1
GoPubMedNXPH1
iHOPNXPH1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:23:01 CEST 2017

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