Atlas of Genetics and Cytogenetics in Oncology and Haematology


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NXPH2 (neurexophilin 2)

Identity

Other aliasNPH2
HGNC (Hugo) NXPH2
LocusID (NCBI) 11249
Atlas_Id 56966
Location 2q22.1  [Link to chromosome band 2q22]
Location_base_pair Starts at 138669157 and ends at 138780241 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NXPH2   8076
Cards
Entrez_Gene (NCBI)NXPH2  11249  neurexophilin 2
AliasesNPH2
GeneCards (Weizmann)NXPH2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:138669157-138780241 [Contig_View]  NXPH2 [Vega]
TCGA cBioPortalNXPH2
AceView (NCBI)NXPH2
Genatlas (Paris)NXPH2
WikiGenes11249
SOURCE (Princeton)NXPH2
Genetics Home Reference (NIH)NXPH2
Genomic and cartography
GoldenPath hg38 (UCSC)NXPH2  -     chr2:138669157-138780241 -  2q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NXPH2  -     2q22.1   [Description]    (hg19-Feb_2009)
EnsemblNXPH2 - 2q22.1 [CytoView hg19]  NXPH2 - 2q22.1 [CytoView hg38]
Mapping of homologs : NCBINXPH2 [Mapview hg19]  NXPH2 [Mapview hg38]
OMIM604635   
Gene and transcription
Genbank (Entrez)AB162675 AF043467 BC101461 BC101462 BC101463
RefSeq transcript (Entrez)NM_007226
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NXPH2
Cluster EST : UnigeneHs.435019 [ NCBI ]
CGAP (NCI)Hs.435019
Gene ExpressionNXPH2 [ NCBI-GEO ]   NXPH2 [ EBI - ARRAY_EXPRESS ]   NXPH2 [ SEEK ]   NXPH2 [ MEM ]
Gene Expression Viewer (FireBrowse)NXPH2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11249
GTEX Portal (Tissue expression)NXPH2
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95156   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95156  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95156
Splice isoforms : SwissVarO95156
PhosPhoSitePlusO95156
Domains : Interpro (EBI)Nxph    NXPH/NXPE   
Domain families : Pfam (Sanger)Neurexophilin (PF06312)   
Domain families : Pfam (NCBI)pfam063128/A>&lbcp;  
Conserved Domain (NCBI)NXPH2
DMDM Disease mutations11249
Blocks (Seattle)NXPH2
SuperfamilyO95156
Peptide AtlasO95156
IPIIPI00028862   
Protein Interaction databases
DIP (DOE-UCLA)O95156
IntAct (EBI)O95156
BioGRIDNXPH2
STRING (EMBL)NXPH2
ZODIACNXPH2
Ontologies - Pathways
QuickGOO95156
Ontology : AmiGOmolecular_function  receptor binding  extracellular region  neuropeptide signaling pathway  
Ontology : EGO-EBImolecular_function  receptor binding  extracellular region  neuropeptide signaling pathway  
NDEx NetworkNXPH2
Atlas of Cancer Signalling NetworkNXPH2
Wikipedia pathwaysNXPH2
Orthology - Evolution
OrthoDB11249
Phylogenetic Trees/Animal Genes : TreeFamNXPH2
HOVERGENO95156
HOGENOMO95156
Homologs : HomoloGeneNXPH2
Homology/Alignments : Family Browser (UCSC)NXPH2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNXPH2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NXPH2
dbVarNXPH2
ClinVarNXPH2
1000_GenomesNXPH2 
Exome Variant ServerNXPH2
ExAC (Exome Aggregation Consortium)NXPH2 (select the gene name)
Genetic variants : HAPMAP11249
Genomic Variants (DGV)NXPH2 [DGVbeta]
DECIPHERNXPH2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNXPH2 
Mutations
ICGC Data PortalNXPH2 
TCGA Data PortalNXPH2 
Broad Tumor PortalNXPH2
OASIS PortalNXPH2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNXPH2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNXPH2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NXPH2
DgiDB (Drug Gene Interaction Database)NXPH2
DoCM (Curated mutations)NXPH2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NXPH2 (select a term)
intoGenNXPH2
Cancer3DNXPH2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604635   
Orphanet
MedgenNXPH2
Genetic Testing Registry NXPH2
NextProtO95156 [Medical]
TSGene11249
GENETestsNXPH2
Target ValidationNXPH2
Huge Navigator NXPH2 [HugePedia]
snp3D : Map Gene to Disease11249
BioCentury BCIQNXPH2
ClinGenNXPH2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11249
Chemical/Pharm GKB GenePA31864
Clinical trialNXPH2
Miscellaneous
canSAR (ICR)NXPH2 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNXPH2
EVEXNXPH2
GoPubMedNXPH2
iHOPNXPH2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:02:11 CEST 2017

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