Atlas of Genetics and Cytogenetics in Oncology and Haematology


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NXPH3 (neurexophilin 3)

Identity

Alias_symbol (synonym)NPH3
Other alias
HGNC (Hugo) NXPH3
LocusID (NCBI) 11248
Atlas_Id 71071
Location 17q21.33  [Link to chromosome band 17q21]
Location_base_pair Starts at 49575936 and ends at 49583809 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NXPH3   8077
Cards
Entrez_Gene (NCBI)NXPH3  11248  neurexophilin 3
AliasesNPH3
GeneCards (Weizmann)NXPH3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:49575936-49583809 [Contig_View]  NXPH3 [Vega]
TCGA cBioPortalNXPH3
AceView (NCBI)NXPH3
Genatlas (Paris)NXPH3
WikiGenes11248
SOURCE (Princeton)NXPH3
Genetics Home Reference (NIH)NXPH3
Genomic and cartography
GoldenPath hg38 (UCSC)NXPH3  -     chr17:49575936-49583809 +  17q21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NXPH3  -     17q21.33   [Description]    (hg19-Feb_2009)
EnsemblNXPH3 - 17q21.33 [CytoView hg19]  NXPH3 - 17q21.33 [CytoView hg38]
Mapping of homologs : NCBINXPH3 [Mapview hg19]  NXPH3 [Mapview hg38]
OMIM604636   
Gene and transcription
Genbank (Entrez)AA325150 AB032985 AF043468 AK308928 AL834282
RefSeq transcript (Entrez)NM_007225
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NXPH3
Cluster EST : UnigeneHs.55069 [ NCBI ]
CGAP (NCI)Hs.55069
Gene ExpressionNXPH3 [ NCBI-GEO ]   NXPH3 [ EBI - ARRAY_EXPRESS ]   NXPH3 [ SEEK ]   NXPH3 [ MEM ]
Gene Expression Viewer (FireBrowse)NXPH3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11248
GTEX Portal (Tissue expression)NXPH3
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95157   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95157  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95157
Splice isoforms : SwissVarO95157
PhosPhoSitePlusO95157
Domains : Interpro (EBI)Nxph    NXPH/NXPE   
Domain families : Pfam (Sanger)Neurexophilin (PF06312)   
Domain families : Pfam (NCBI)pfam06312   
Conserved Domain (NCBI)NXPH3
DMDM Disease mutations11248
Blocks (Seattle)NXPH3
SuperfamilyO95157
Peptide AtlasO95157
HPRD06865
IPIIPI00028864   IPI00967039   
Protein Interaction databases
DIP (DOE-UCLA)O95157
IntAct (EBI)O95157
BioGRIDNXPH3
STRING (EMBL)NXPH3
ZODIACNXPH3
Ontologies - Pathways
QuickGOO95157
Ontology : AmiGOmolecular_function  receptor binding  extracellular region  neuropeptide signaling pathway  
Ontology : EGO-EBImolecular_function  receptor binding  extracellular region  neuropeptide signaling pathway  
NDEx NetworkNXPH3
Atlas of Cancer Signalling NetworkNXPH3
Wikipedia pathwaysNXPH3
Orthology - Evolution
OrthoDB11248
Phylogenetic Trees/Animal Genes : TreeFamNXPH3
HOVERGENO95157
HOGENOMO95157
Homologs : HomoloGeneNXPH3
Homology/Alignments : Family Browser (UCSC)NXPH3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNXPH3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NXPH3
dbVarNXPH3
ClinVarNXPH3
1000_GenomesNXPH3 
Exome Variant ServerNXPH3
ExAC (Exome Aggregation Consortium)NXPH3 (select the gene name)
Genetic variants : HAPMAP11248
Genomic Variants (DGV)NXPH3 [DGVbeta]
DECIPHERNXPH3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNXPH3 
Mutations
ICGC Data PortalNXPH3 
TCGA Data PortalNXPH3 
Broad Tumor PortalNXPH3
OASIS PortalNXPH3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNXPH3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNXPH3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NXPH3
DgiDB (Drug Gene Interaction Database)NXPH3
DoCM (Curated mutations)NXPH3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NXPH3 (select a term)
intoGenNXPH3
Cancer3DNXPH3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604636   
Orphanet
MedgenNXPH3
Genetic Testing Registry NXPH3
NextProtO95157 [Medical]
TSGene11248
GENETestsNXPH3
Target ValidationNXPH3
Huge Navigator NXPH3 [HugePedia]
snp3D : Map Gene to Disease11248
BioCentury BCIQNXPH3
ClinGenNXPH3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11248
Chemical/Pharm GKB GenePA31865
Clinical trialNXPH3
Miscellaneous
canSAR (ICR)NXPH3 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNXPH3
EVEXNXPH3
GoPubMedNXPH3
iHOPNXPH3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:33:25 CEST 2017

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