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NXPH4 (neurexophilin 4)

Identity

Alias_symbol (synonym)NPH4
Other alias
HGNC (Hugo) NXPH4
LocusID (NCBI) 11247
Atlas_Id 71072
Location 12q13.3  [Link to chromosome band 12q13]
Location_base_pair Starts at 57610578 and ends at 57620232 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
HDLBP (2q37.3) / NXPH4 (12q13.3)RDX (11q22.3) / NXPH4 (12q13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NXPH4   8078
Cards
Entrez_Gene (NCBI)NXPH4  11247  neurexophilin 4
AliasesNPH4
GeneCards (Weizmann)NXPH4
Ensembl hg19 (Hinxton)ENSG00000182379 [Gene_View]  chr12:57610578-57620232 [Contig_View]  NXPH4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000182379 [Gene_View]  chr12:57610578-57620232 [Contig_View]  NXPH4 [Vega]
ICGC DataPortalENSG00000182379
TCGA cBioPortalNXPH4
AceView (NCBI)NXPH4
Genatlas (Paris)NXPH4
WikiGenes11247
SOURCE (Princeton)NXPH4
Genetics Home Reference (NIH)NXPH4
Genomic and cartography
GoldenPath hg19 (UCSC)NXPH4  -     chr12:57610578-57620232 +  12q13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NXPH4  -     12q13.3   [Description]    (hg38-Dec_2013)
EnsemblNXPH4 - 12q13.3 [CytoView hg19]  NXPH4 - 12q13.3 [CytoView hg38]
Mapping of homologs : NCBINXPH4 [Mapview hg19]  NXPH4 [Mapview hg38]
OMIM604637   
Gene and transcription
Genbank (Entrez)AF043469 AK094231 AK290949 AY358614 BC036679
RefSeq transcript (Entrez)NM_007224
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)NXPH4
Cluster EST : UnigeneHs.745023 [ NCBI ]
CGAP (NCI)Hs.745023
Alternative Splicing GalleryENSG00000182379
Gene ExpressionNXPH4 [ NCBI-GEO ]   NXPH4 [ EBI - ARRAY_EXPRESS ]   NXPH4 [ SEEK ]   NXPH4 [ MEM ]
Gene Expression Viewer (FireBrowse)NXPH4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11247
GTEX Portal (Tissue expression)NXPH4
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95158   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95158  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95158
Splice isoforms : SwissVarO95158
PhosPhoSitePlusO95158
Domains : Interpro (EBI)Neurexophilin    NXPH/NXPE   
Domain families : Pfam (Sanger)Neurexophilin (PF06312)   
Domain families : Pfam (NCBI)pfam06312   
Conserved Domain (NCBI)NXPH4
DMDM Disease mutations11247
Blocks (Seattle)NXPH4
SuperfamilyO95158
Human Protein AtlasENSG00000182379
Peptide AtlasO95158
HPRD06866
IPIIPI00293723   IPI01025588   
Protein Interaction databases
DIP (DOE-UCLA)O95158
IntAct (EBI)O95158
FunCoupENSG00000182379
BioGRIDNXPH4
STRING (EMBL)NXPH4
ZODIACNXPH4
Ontologies - Pathways
QuickGOO95158
Ontology : AmiGOmolecular_function  cellular_component  extracellular region  neuropeptide signaling pathway  
Ontology : EGO-EBImolecular_function  cellular_component  extracellular region  neuropeptide signaling pathway  
NDEx NetworkNXPH4
Atlas of Cancer Signalling NetworkNXPH4
Wikipedia pathwaysNXPH4
Orthology - Evolution
OrthoDB11247
GeneTree (enSembl)ENSG00000182379
Phylogenetic Trees/Animal Genes : TreeFamNXPH4
HOVERGENO95158
HOGENOMO95158
Homologs : HomoloGeneNXPH4
Homology/Alignments : Family Browser (UCSC)NXPH4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNXPH4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NXPH4
dbVarNXPH4
ClinVarNXPH4
1000_GenomesNXPH4 
Exome Variant ServerNXPH4
ExAC (Exome Aggregation Consortium)NXPH4 (select the gene name)
Genetic variants : HAPMAP11247
Genomic Variants (DGV)NXPH4 [DGVbeta]
DECIPHER (Syndromes)12:57610578-57620232  ENSG00000182379
CONAN: Copy Number AnalysisNXPH4 
Mutations
ICGC Data PortalNXPH4 
TCGA Data PortalNXPH4 
Broad Tumor PortalNXPH4
OASIS PortalNXPH4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNXPH4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNXPH4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NXPH4
DgiDB (Drug Gene Interaction Database)NXPH4
DoCM (Curated mutations)NXPH4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NXPH4 (select a term)
intoGenNXPH4
Cancer3DNXPH4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604637   
Orphanet
MedgenNXPH4
Genetic Testing Registry NXPH4
NextProtO95158 [Medical]
TSGene11247
GENETestsNXPH4
Huge Navigator NXPH4 [HugePedia]
snp3D : Map Gene to Disease11247
BioCentury BCIQNXPH4
ClinGenNXPH4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11247
Chemical/Pharm GKB GenePA31866
Clinical trialNXPH4
Miscellaneous
canSAR (ICR)NXPH4 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNXPH4
EVEXNXPH4
GoPubMedNXPH4
iHOPNXPH4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:35:43 CET 2017

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