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NXT1 (nuclear transport factor 2 like export factor 1)

Identity

Alias_namesNTX2-like export factor1
NTF2-like export factor 1
nuclear transport factor 2-like export factor 1
Alias_symbol (synonym)P15
MTR2
Other alias
HGNC (Hugo) NXT1
LocusID (NCBI) 29107
Atlas_Id 71073
Location 20p11.21  [Link to chromosome band 20p11]
Location_base_pair Starts at 23350736 and ends at 23354771 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NXT1 (20p11.21) / TNRC6B (22q13.1)NXT1 (20p11.21) / VPS16 (20p13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NXT1   15913
Cards
Entrez_Gene (NCBI)NXT1  29107  nuclear transport factor 2 like export factor 1
AliasesMTR2; P15
GeneCards (Weizmann)NXT1
Ensembl hg19 (Hinxton)ENSG00000132661 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132661 [Gene_View]  chr20:23350736-23354771 [Contig_View]  NXT1 [Vega]
ICGC DataPortalENSG00000132661
TCGA cBioPortalNXT1
AceView (NCBI)NXT1
Genatlas (Paris)NXT1
WikiGenes29107
SOURCE (Princeton)NXT1
Genetics Home Reference (NIH)NXT1
Genomic and cartography
GoldenPath hg38 (UCSC)NXT1  -     chr20:23350736-23354771 +  20p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NXT1  -     20p11.21   [Description]    (hg19-Feb_2009)
EnsemblNXT1 - 20p11.21 [CytoView hg19]  NXT1 - 20p11.21 [CytoView hg38]
Mapping of homologs : NCBINXT1 [Mapview hg19]  NXT1 [Mapview hg38]
OMIM605811   
Gene and transcription
Genbank (Entrez)AF156957 AK026360 BC000759 BC002687 BC003029
RefSeq transcript (Entrez)NM_013248
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NXT1
Cluster EST : UnigeneHs.516933 [ NCBI ]
CGAP (NCI)Hs.516933
Alternative Splicing GalleryENSG00000132661
Gene ExpressionNXT1 [ NCBI-GEO ]   NXT1 [ EBI - ARRAY_EXPRESS ]   NXT1 [ SEEK ]   NXT1 [ MEM ]
Gene Expression Viewer (FireBrowse)NXT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29107
GTEX Portal (Tissue expression)NXT1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UKK6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UKK6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UKK6
Splice isoforms : SwissVarQ9UKK6
PhosPhoSitePlusQ9UKK6
Domaine pattern : Prosite (Expaxy)NTF2_DOMAIN (PS50177)   
Domains : Interpro (EBI)NTF2    NTF2-like_dom    Nuclear_transport_factor_2_euk   
Domain families : Pfam (Sanger)NTF2 (PF02136)   
Domain families : Pfam (NCBI)pfam02136   
Conserved Domain (NCBI)NXT1
DMDM Disease mutations29107
Blocks (Seattle)NXT1
PDB (SRS)1JKG    1JN5    4WYK   
PDB (PDBSum)1JKG    1JN5    4WYK   
PDB (IMB)1JKG    1JN5    4WYK   
PDB (RSDB)1JKG    1JN5    4WYK   
Structural Biology KnowledgeBase1JKG    1JN5    4WYK   
SCOP (Structural Classification of Proteins)1JKG    1JN5    4WYK   
CATH (Classification of proteins structures)1JKG    1JN5    4WYK   
SuperfamilyQ9UKK6
Human Protein AtlasENSG00000132661
Peptide AtlasQ9UKK6
HPRD16159
IPIIPI00007605   
Protein Interaction databases
DIP (DOE-UCLA)Q9UKK6
IntAct (EBI)Q9UKK6
FunCoupENSG00000132661
BioGRIDNXT1
STRING (EMBL)NXT1
ZODIACNXT1
Ontologies - Pathways
QuickGOQ9UKK6
Ontology : AmiGOprotein binding  nuclear pore  nucleoplasm  nucleoplasm  cytoplasm  cytosol  cytosol  RNA export from nucleus  mRNA export from nucleus  Ran GTPase binding  nuclear speck  
Ontology : EGO-EBIprotein binding  nuclear pore  nucleoplasm  nucleoplasm  cytoplasm  cytosol  cytosol  RNA export from nucleus  mRNA export from nucleus  Ran GTPase binding  nuclear speck  
Pathways : KEGGRibosome biogenesis in eukaryotes    RNA transport    mRNA surveillance pathway    Influenza A   
NDEx NetworkNXT1
Atlas of Cancer Signalling NetworkNXT1
Wikipedia pathwaysNXT1
Orthology - Evolution
OrthoDB29107
GeneTree (enSembl)ENSG00000132661
Phylogenetic Trees/Animal Genes : TreeFamNXT1
HOVERGENQ9UKK6
HOGENOMQ9UKK6
Homologs : HomoloGeneNXT1
Homology/Alignments : Family Browser (UCSC)NXT1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNXT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NXT1
dbVarNXT1
ClinVarNXT1
1000_GenomesNXT1 
Exome Variant ServerNXT1
ExAC (Exome Aggregation Consortium)NXT1 (select the gene name)
Genetic variants : HAPMAP29107
Genomic Variants (DGV)NXT1 [DGVbeta]
DECIPHERNXT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNXT1 
Mutations
ICGC Data PortalNXT1 
TCGA Data PortalNXT1 
Broad Tumor PortalNXT1
OASIS PortalNXT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNXT1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNXT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NXT1
DgiDB (Drug Gene Interaction Database)NXT1
DoCM (Curated mutations)NXT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NXT1 (select a term)
intoGenNXT1
Cancer3DNXT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605811   
Orphanet
MedgenNXT1
Genetic Testing Registry NXT1
NextProtQ9UKK6 [Medical]
TSGene29107
GENETestsNXT1
Target ValidationNXT1
Huge Navigator NXT1 [HugePedia]
snp3D : Map Gene to Disease29107
BioCentury BCIQNXT1
ClinGenNXT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29107
Chemical/Pharm GKB GenePA31867
Clinical trialNXT1
Miscellaneous
canSAR (ICR)NXT1 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNXT1
EVEXNXT1
GoPubMedNXT1
iHOPNXT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:32:33 CEST 2017

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