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NXT2 (nuclear transport factor 2-like export factor 2)

Identity

Alias_namesnuclear transport factor 2-like export factor 2
Alias_symbol (synonym)P15-2
Other alias
HGNC (Hugo) NXT2
LocusID (NCBI) 55916
Atlas_Id 71074
Location Xq23  [Link to chromosome band Xq23]
Location_base_pair Starts at 108780059 and ends at 108787927 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NXT2   18151
Cards
Entrez_Gene (NCBI)NXT2  55916  nuclear transport factor 2-like export factor 2
AliasesP15-2
GeneCards (Weizmann)NXT2
Ensembl hg19 (Hinxton)ENSG00000101888 [Gene_View]  chrX:108780059-108787927 [Contig_View]  NXT2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000101888 [Gene_View]  chrX:108780059-108787927 [Contig_View]  NXT2 [Vega]
ICGC DataPortalENSG00000101888
TCGA cBioPortalNXT2
AceView (NCBI)NXT2
Genatlas (Paris)NXT2
WikiGenes55916
SOURCE (Princeton)NXT2
Genetics Home Reference (NIH)NXT2
Genomic and cartography
GoldenPath hg19 (UCSC)NXT2  -     chrX:108780059-108787927 +  Xq23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NXT2  -     Xq23   [Description]    (hg38-Dec_2013)
EnsemblNXT2 - Xq23 [CytoView hg19]  NXT2 - Xq23 [CytoView hg38]
Mapping of homologs : NCBINXT2 [Mapview hg19]  NXT2 [Mapview hg38]
OMIM300320   
Gene and transcription
Genbank (Entrez)AA806876 AF201942 AF212223 AF246127 AJ277591
RefSeq transcript (Entrez)NM_001242617 NM_001242618 NM_018698
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_029691 NT_011651 NW_004929444
Consensus coding sequences : CCDS (NCBI)NXT2
Cluster EST : UnigeneHs.25010 [ NCBI ]
CGAP (NCI)Hs.25010
Alternative Splicing GalleryENSG00000101888
Gene ExpressionNXT2 [ NCBI-GEO ]   NXT2 [ EBI - ARRAY_EXPRESS ]   NXT2 [ SEEK ]   NXT2 [ MEM ]
Gene Expression Viewer (FireBrowse)NXT2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55916
GTEX Portal (Tissue expression)NXT2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NPJ8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NPJ8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NPJ8
Splice isoforms : SwissVarQ9NPJ8
PhosPhoSitePlusQ9NPJ8
Domaine pattern : Prosite (Expaxy)NTF2_DOMAIN (PS50177)   
Domains : Interpro (EBI)NTF2    Nuclear_transport_factor_2_euk   
Domain families : Pfam (Sanger)NTF2 (PF02136)   
Domain families : Pfam (NCBI)pfam02136   
Conserved Domain (NCBI)NXT2
DMDM Disease mutations55916
Blocks (Seattle)NXT2
SuperfamilyQ9NPJ8
Human Protein AtlasENSG00000101888
Peptide AtlasQ9NPJ8
HPRD02264
IPIIPI00221024   IPI00221003   IPI00641916   IPI00930605   
Protein Interaction databases
DIP (DOE-UCLA)Q9NPJ8
IntAct (EBI)Q9NPJ8
FunCoupENSG00000101888
BioGRIDNXT2
STRING (EMBL)NXT2
ZODIACNXT2
Ontologies - Pathways
QuickGOQ9NPJ8
Ontology : AmiGOprotein binding  nucleus  cytoplasm  protein transport  mRNA transport  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  protein transport  mRNA transport  
Pathways : KEGGRibosome biogenesis in eukaryotes    RNA transport    mRNA surveillance pathway    Influenza A   
NDEx NetworkNXT2
Atlas of Cancer Signalling NetworkNXT2
Wikipedia pathwaysNXT2
Orthology - Evolution
OrthoDB55916
GeneTree (enSembl)ENSG00000101888
Phylogenetic Trees/Animal Genes : TreeFamNXT2
HOVERGENQ9NPJ8
HOGENOMQ9NPJ8
Homologs : HomoloGeneNXT2
Homology/Alignments : Family Browser (UCSC)NXT2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNXT2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NXT2
dbVarNXT2
ClinVarNXT2
1000_GenomesNXT2 
Exome Variant ServerNXT2
ExAC (Exome Aggregation Consortium)NXT2 (select the gene name)
Genetic variants : HAPMAP55916
Genomic Variants (DGV)NXT2 [DGVbeta]
DECIPHER (Syndromes)X:108780059-108787927  ENSG00000101888
CONAN: Copy Number AnalysisNXT2 
Mutations
ICGC Data PortalNXT2 
TCGA Data PortalNXT2 
Broad Tumor PortalNXT2
OASIS PortalNXT2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNXT2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNXT2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NXT2
DgiDB (Drug Gene Interaction Database)NXT2
DoCM (Curated mutations)NXT2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NXT2 (select a term)
intoGenNXT2
Cancer3DNXT2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300320   
Orphanet
MedgenNXT2
Genetic Testing Registry NXT2
NextProtQ9NPJ8 [Medical]
TSGene55916
GENETestsNXT2
Huge Navigator NXT2 [HugePedia]
snp3D : Map Gene to Disease55916
BioCentury BCIQNXT2
ClinGenNXT2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55916
Chemical/Pharm GKB GenePA134928861
Clinical trialNXT2
Miscellaneous
canSAR (ICR)NXT2 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNXT2
EVEXNXT2
GoPubMedNXT2
iHOPNXT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:35:43 CET 2017

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