Atlas of Genetics and Cytogenetics in Oncology and Haematology

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NYNRIN (NYN domain and retroviral integrase containing)

Identity

Alias (NCBI)CGIN1
KIAA1305
HGNC (Hugo) NYNRIN
HGNC Alias symbFLJ11811
CGIN1
HGNC Alias nameCousin of GIN1
HGNC Previous nameKIAA1305
HGNC Previous nameKIAA1305
LocusID (NCBI) 57523
Atlas_Id 71076
Location 14q12  [Link to chromosome band 14q12]
Location_base_pair Starts at 24398786 and ends at 24419288 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)NYNRIN   20165
Cards
Entrez_Gene (NCBI)NYNRIN  57523  NYN domain and retroviral integrase containing
AliasesCGIN1; KIAA1305
GeneCards (Weizmann)NYNRIN
Ensembl hg19 (Hinxton)ENSG00000205978 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205978 [Gene_View]  ENSG00000205978 [Sequence]  chr14:24398786-24419288 [Contig_View]  NYNRIN [Vega]
ICGC DataPortalENSG00000205978
TCGA cBioPortalNYNRIN
AceView (NCBI)NYNRIN
Genatlas (Paris)NYNRIN
WikiGenes57523
SOURCE (Princeton)NYNRIN
Genetics Home Reference (NIH)NYNRIN
Genomic and cartography
GoldenPath hg38 (UCSC)NYNRIN  -     chr14:24398786-24419288 +  14q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NYNRIN  -     14q12   [Description]    (hg19-Feb_2009)
GoldenPathNYNRIN - 14q12 [CytoView hg19]  NYNRIN - 14q12 [CytoView hg38]
ImmunoBaseENSG00000205978
genome Data Viewer NCBINYNRIN [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AB037726 AK021873 BC008219 BC065283 BX248773
RefSeq transcript (Entrez)NM_025081
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NYNRIN
Alternative Splicing GalleryENSG00000205978
Gene ExpressionNYNRIN [ NCBI-GEO ]   NYNRIN [ EBI - ARRAY_EXPRESS ]   NYNRIN [ SEEK ]   NYNRIN [ MEM ]
Gene Expression Viewer (FireBrowse)NYNRIN [ Firebrowse - Broad ]
GenevisibleExpression of NYNRIN in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57523
GTEX Portal (Tissue expression)NYNRIN
Human Protein AtlasENSG00000205978-NYNRIN [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P2P1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P2P1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P2P1
Splice isoforms : SwissVarQ9P2P1
PhosPhoSitePlusQ9P2P1
Domaine pattern : Prosite (Expaxy)INTEGRASE (PS50994)   
Domains : Interpro (EBI)Integrase_cat-core    Integrase_H2C2    RNase_Zc3h12_NYN    RNaseH-like_sf    RNaseH_sf    RT_RNaseH_2   
Domain families : Pfam (Sanger)Integrase_H2C2 (PF17921)    RNase_Zc3h12a (PF11977)    RT_RNaseH_2 (PF17919)   
Domain families : Pfam (NCBI)pfam17921    pfam11977    pfam17919   
Conserved Domain (NCBI)NYNRIN
DMDM Disease mutations57523
Blocks (Seattle)NYNRIN
SuperfamilyQ9P2P1
Human Protein Atlas [tissue]ENSG00000205978-NYNRIN [tissue]
Peptide AtlasQ9P2P1
IPIIPI00398994   IPI00746993   IPI00953193   IPI00386774   IPI00978254   
Protein Interaction databases
DIP (DOE-UCLA)Q9P2P1
IntAct (EBI)Q9P2P1
FunCoupENSG00000205978
BioGRIDNYNRIN
STRING (EMBL)NYNRIN
ZODIACNYNRIN
Ontologies - Pathways
QuickGOQ9P2P1
Ontology : AmiGOmolecular_function  nucleic acid binding  cellular_component  biological_process  DNA integration  integral component of membrane  
Ontology : EGO-EBImolecular_function  nucleic acid binding  cellular_component  biological_process  DNA integration  integral component of membrane  
NDEx NetworkNYNRIN
Atlas of Cancer Signalling NetworkNYNRIN
Wikipedia pathwaysNYNRIN
Orthology - Evolution
OrthoDB57523
GeneTree (enSembl)ENSG00000205978
Phylogenetic Trees/Animal Genes : TreeFamNYNRIN
HOGENOMQ9P2P1
Homologs : HomoloGeneNYNRIN
Homology/Alignments : Family Browser (UCSC)NYNRIN
Gene fusions - Rearrangements
Fusion : QuiverNYNRIN
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNYNRIN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NYNRIN
dbVarNYNRIN
ClinVarNYNRIN
1000_GenomesNYNRIN 
Exome Variant ServerNYNRIN
GNOMAD BrowserENSG00000205978
Varsome BrowserNYNRIN
Genetic variants : HAPMAP57523
Genomic Variants (DGV)NYNRIN [DGVbeta]
DECIPHERNYNRIN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNYNRIN 
Mutations
ICGC Data PortalNYNRIN 
TCGA Data PortalNYNRIN 
Broad Tumor PortalNYNRIN
OASIS PortalNYNRIN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNYNRIN  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNYNRIN
Mutations and Diseases : HGMDNYNRIN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NYNRIN
DgiDB (Drug Gene Interaction Database)NYNRIN
DoCM (Curated mutations)NYNRIN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NYNRIN (select a term)
intoGenNYNRIN
Cancer3DNYNRIN(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETNYNRIN
MedgenNYNRIN
Genetic Testing Registry NYNRIN
NextProtQ9P2P1 [Medical]
TSGene57523
GENETestsNYNRIN
Target ValidationNYNRIN
Huge Navigator NYNRIN [HugePedia]
snp3D : Map Gene to Disease57523
BioCentury BCIQNYNRIN
ClinGenNYNRIN
Clinical trials, drugs, therapy
Protein Interactions : CTD57523
Pharm GKB GenePA165479228
Clinical trialNYNRIN
Miscellaneous
canSAR (ICR)NYNRIN (select the gene name)
HarmonizomeNYNRIN
DataMed IndexNYNRIN
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNYNRIN
EVEXNYNRIN
GoPubMedNYNRIN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 16:20:21 CEST 2020
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