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NYNRIN (NYN domain and retroviral integrase containing)

Identity

Alias_namesKIAA1305
KIAA1305
Alias_symbol (synonym)FLJ11811
CGIN1
Other alias
HGNC (Hugo) NYNRIN
LocusID (NCBI) 57523
Atlas_Id 71076
Location 14q12  [Link to chromosome band 14q12]
Location_base_pair Starts at 24867992 and ends at 24888494 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NYNRIN   20165
Cards
Entrez_Gene (NCBI)NYNRIN  57523  NYN domain and retroviral integrase containing
AliasesCGIN1; KIAA1305
GeneCards (Weizmann)NYNRIN
Ensembl hg19 (Hinxton)ENSG00000205978 [Gene_View]  chr14:24867992-24888494 [Contig_View]  NYNRIN [Vega]
Ensembl hg38 (Hinxton)ENSG00000205978 [Gene_View]  chr14:24867992-24888494 [Contig_View]  NYNRIN [Vega]
ICGC DataPortalENSG00000205978
TCGA cBioPortalNYNRIN
AceView (NCBI)NYNRIN
Genatlas (Paris)NYNRIN
WikiGenes57523
SOURCE (Princeton)NYNRIN
Genetics Home Reference (NIH)NYNRIN
Genomic and cartography
GoldenPath hg19 (UCSC)NYNRIN  -     chr14:24867992-24888494 +  14q12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NYNRIN  -     14q12   [Description]    (hg38-Dec_2013)
EnsemblNYNRIN - 14q12 [CytoView hg19]  NYNRIN - 14q12 [CytoView hg38]
Mapping of homologs : NCBINYNRIN [Mapview hg19]  NYNRIN [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB037726 AK021873 BC008219 BC065283 BX248773
RefSeq transcript (Entrez)NM_025081
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)NYNRIN
Cluster EST : UnigeneHs.288348 [ NCBI ]
CGAP (NCI)Hs.288348
Alternative Splicing GalleryENSG00000205978
Gene ExpressionNYNRIN [ NCBI-GEO ]   NYNRIN [ EBI - ARRAY_EXPRESS ]   NYNRIN [ SEEK ]   NYNRIN [ MEM ]
Gene Expression Viewer (FireBrowse)NYNRIN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57523
GTEX Portal (Tissue expression)NYNRIN
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P2P1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P2P1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P2P1
Splice isoforms : SwissVarQ9P2P1
PhosPhoSitePlusQ9P2P1
Domaine pattern : Prosite (Expaxy)INTEGRASE (PS50994)   
Domains : Interpro (EBI)Integrase_cat-core    RNase_Zc3h12    RNaseH-like_dom   
Domain families : Pfam (Sanger)RNase_Zc3h12a (PF11977)   
Domain families : Pfam (NCBI)pfam11977   
Conserved Domain (NCBI)NYNRIN
DMDM Disease mutations57523
Blocks (Seattle)NYNRIN
SuperfamilyQ9P2P1
Human Protein AtlasENSG00000205978
Peptide AtlasQ9P2P1
IPIIPI00398994   IPI00746993   IPI00953193   IPI00386774   IPI00978254   
Protein Interaction databases
DIP (DOE-UCLA)Q9P2P1
IntAct (EBI)Q9P2P1
FunCoupENSG00000205978
BioGRIDNYNRIN
STRING (EMBL)NYNRIN
ZODIACNYNRIN
Ontologies - Pathways
QuickGOQ9P2P1
Ontology : AmiGOmolecular_function  nucleic acid binding  cellular_component  biological_process  DNA integration  integral component of membrane  
Ontology : EGO-EBImolecular_function  nucleic acid binding  cellular_component  biological_process  DNA integration  integral component of membrane  
NDEx NetworkNYNRIN
Atlas of Cancer Signalling NetworkNYNRIN
Wikipedia pathwaysNYNRIN
Orthology - Evolution
OrthoDB57523
GeneTree (enSembl)ENSG00000205978
Phylogenetic Trees/Animal Genes : TreeFamNYNRIN
HOVERGENQ9P2P1
HOGENOMQ9P2P1
Homologs : HomoloGeneNYNRIN
Homology/Alignments : Family Browser (UCSC)NYNRIN
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNYNRIN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NYNRIN
dbVarNYNRIN
ClinVarNYNRIN
1000_GenomesNYNRIN 
Exome Variant ServerNYNRIN
ExAC (Exome Aggregation Consortium)NYNRIN (select the gene name)
Genetic variants : HAPMAP57523
Genomic Variants (DGV)NYNRIN [DGVbeta]
DECIPHER (Syndromes)14:24867992-24888494  ENSG00000205978
CONAN: Copy Number AnalysisNYNRIN 
Mutations
ICGC Data PortalNYNRIN 
TCGA Data PortalNYNRIN 
Broad Tumor PortalNYNRIN
OASIS PortalNYNRIN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNYNRIN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNYNRIN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NYNRIN
DgiDB (Drug Gene Interaction Database)NYNRIN
DoCM (Curated mutations)NYNRIN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NYNRIN (select a term)
intoGenNYNRIN
Cancer3DNYNRIN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNYNRIN
Genetic Testing Registry NYNRIN
NextProtQ9P2P1 [Medical]
TSGene57523
GENETestsNYNRIN
Huge Navigator NYNRIN [HugePedia]
snp3D : Map Gene to Disease57523
BioCentury BCIQNYNRIN
ClinGenNYNRIN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57523
Chemical/Pharm GKB GenePA165479228
Clinical trialNYNRIN
Miscellaneous
canSAR (ICR)NYNRIN (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNYNRIN
EVEXNYNRIN
GoPubMedNYNRIN
iHOPNYNRIN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:35:43 CET 2017

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