Atlas of Genetics and Cytogenetics in Oncology and Haematology


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NYX (nyctalopin)

Identity

Alias_namesCSNB1
CSNB4
Alias_symbol (synonym)CLRP
CSNB1A
Other aliasNBM1
HGNC (Hugo) NYX
LocusID (NCBI) 60506
Atlas_Id 71077
Location Xp11.4  [Link to chromosome band Xp11]
Location_base_pair Starts at 41306713 and ends at 41334905 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NYX   8082
Cards
Entrez_Gene (NCBI)NYX  60506  nyctalopin
AliasesCLRP; CSNB1; CSNB1A; CSNB4; 
NBM1
GeneCards (Weizmann)NYX
Ensembl hg19 (Hinxton)ENSG00000188937 [Gene_View]  chrX:41306713-41334905 [Contig_View]  NYX [Vega]
Ensembl hg38 (Hinxton)ENSG00000188937 [Gene_View]  chrX:41306713-41334905 [Contig_View]  NYX [Vega]
ICGC DataPortalENSG00000188937
TCGA cBioPortalNYX
AceView (NCBI)NYX
Genatlas (Paris)NYX
WikiGenes60506
SOURCE (Princeton)NYX
Genetics Home Reference (NIH)NYX
Genomic and cartography
GoldenPath hg19 (UCSC)NYX  -     chrX:41306713-41334905 +  Xp11.4   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NYX  -     Xp11.4   [Description]    (hg38-Dec_2013)
EnsemblNYX - Xp11.4 [CytoView hg19]  NYX - Xp11.4 [CytoView hg38]
Mapping of homologs : NCBINYX [Mapview hg19]  NYX [Mapview hg38]
OMIM300278   310500   
Gene and transcription
Genbank (Entrez)AF254868 AJ278865 BC112242 HQ258618
RefSeq transcript (Entrez)NM_022567
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_009112 NT_079573 NW_004929439
Consensus coding sequences : CCDS (NCBI)NYX
Cluster EST : UnigeneHs.302019 [ NCBI ]
CGAP (NCI)Hs.302019
Alternative Splicing GalleryENSG00000188937
Gene ExpressionNYX [ NCBI-GEO ]   NYX [ EBI - ARRAY_EXPRESS ]   NYX [ SEEK ]   NYX [ MEM ]
Gene Expression Viewer (FireBrowse)NYX [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)60506
GTEX Portal (Tissue expression)NYX
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9GZU5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9GZU5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9GZU5
Splice isoforms : SwissVarQ9GZU5
PhosPhoSitePlusQ9GZU5
Domains : Interpro (EBI)Cys-rich_flank_reg_C    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp    LRR-contain_N   
Domain families : Pfam (Sanger)LRR_8 (PF13855)    LRRNT (PF01462)   
Domain families : Pfam (NCBI)pfam13855    pfam01462   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  LRRCT (SM00082)  LRRNT (SM00013)  
Conserved Domain (NCBI)NYX
DMDM Disease mutations60506
Blocks (Seattle)NYX
SuperfamilyQ9GZU5
Human Protein AtlasENSG00000188937
Peptide AtlasQ9GZU5
HPRD02232
IPIIPI00072576   
Protein Interaction databases
DIP (DOE-UCLA)Q9GZU5
IntAct (EBI)Q9GZU5
FunCoupENSG00000188937
BioGRIDNYX
STRING (EMBL)NYX
ZODIACNYX
Ontologies - Pathways
QuickGOQ9GZU5
Ontology : AmiGOmolecular_function  proteinaceous extracellular matrix  intracellular  visual perception  biological_process  response to stimulus  
Ontology : EGO-EBImolecular_function  proteinaceous extracellular matrix  intracellular  visual perception  biological_process  response to stimulus  
NDEx NetworkNYX
Atlas of Cancer Signalling NetworkNYX
Wikipedia pathwaysNYX
Orthology - Evolution
OrthoDB60506
GeneTree (enSembl)ENSG00000188937
Phylogenetic Trees/Animal Genes : TreeFamNYX
HOVERGENQ9GZU5
HOGENOMQ9GZU5
Homologs : HomoloGeneNYX
Homology/Alignments : Family Browser (UCSC)NYX
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNYX [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NYX
dbVarNYX
ClinVarNYX
1000_GenomesNYX 
Exome Variant ServerNYX
ExAC (Exome Aggregation Consortium)NYX (select the gene name)
Genetic variants : HAPMAP60506
Genomic Variants (DGV)NYX [DGVbeta]
DECIPHER (Syndromes)X:41306713-41334905  ENSG00000188937
CONAN: Copy Number AnalysisNYX 
Mutations
ICGC Data PortalNYX 
TCGA Data PortalNYX 
Broad Tumor PortalNYX
OASIS PortalNYX [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNYX  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNYX
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
BioMutasearch NYX
DgiDB (Drug Gene Interaction Database)NYX
DoCM (Curated mutations)NYX (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NYX (select a term)
intoGenNYX
Cancer3DNYX(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300278    310500   
Orphanet923   
MedgenNYX
Genetic Testing Registry NYX
NextProtQ9GZU5 [Medical]
TSGene60506
GENETestsNYX
Huge Navigator NYX [HugePedia]
snp3D : Map Gene to Disease60506
BioCentury BCIQNYX
ClinGenNYX
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD60506
Chemical/Pharm GKB GenePA31871
Clinical trialNYX
Miscellaneous
canSAR (ICR)NYX (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNYX
EVEXNYX
GoPubMedNYX
iHOPNYX
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:35:44 CET 2017

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