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OAF (out at first homolog)

Identity

Alias_namesOAF homolog (Drosophila)
Alias_symbol (synonym)MGC52117
Other aliasNS5ATP13TP2
HGNC (Hugo) OAF
LocusID (NCBI) 220323
Atlas_Id 71079
Location 11q23.3  [Link to chromosome band 11q23]
Location_base_pair Starts at 120211039 and ends at 120229941 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)		AUTS2 (7q11.22) / OAF (11q23.3)OAF (11q23.3) / ARHGEF1 (19q13.2)OAF (11q23.3) / AUTS2 (7q11.22)
OAF (11q23.3) / CDK19 (6q21)OAF (11q23.3) / SLC26A11 (17q25.3)SLC26A11 (17q25.3) / OAF (11q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)OAF   28752
Cards
Entrez_Gene (NCBI)OAF  220323  out at first homolog
AliasesNS5ATP13TP2
GeneCards (Weizmann)OAF
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr11:120211039-120229941 [Contig_View]  OAF [Vega]
TCGA cBioPortalOAF
AceView (NCBI)OAF
Genatlas (Paris)OAF
WikiGenes220323
SOURCE (Princeton)OAF
Genetics Home Reference (NIH)OAF
Genomic and cartography
GoldenPath hg38 (UCSC)OAF  -     chr11:120211039-120229941 +  11q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OAF  -     11q23.3   [Description]    (hg19-Feb_2009)
EnsemblOAF - 11q23.3 [CytoView hg19]  OAF - 11q23.3 [CytoView hg38]
Mapping of homologs : NCBIOAF [Mapview hg19]  OAF [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY459296 BC008339 BC047726 HQ448600
RefSeq transcript (Entrez)NM_178507
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OAF
Cluster EST : UnigeneHs.445081 [ NCBI ]
CGAP (NCI)Hs.445081
Gene ExpressionOAF [ NCBI-GEO ]   OAF [ EBI - ARRAY_EXPRESS ]   OAF [ SEEK ]   OAF [ MEM ]
Gene Expression Viewer (FireBrowse)OAF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)220323
GTEX Portal (Tissue expression)OAF
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86UD1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86UD1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86UD1
Splice isoforms : SwissVarQ86UD1
PhosPhoSitePlusQ86UD1
Domains : Interpro (EBI)Oaf   
Domain families : Pfam (Sanger)OAF (PF14941)   
Domain families : Pfam (NCBI)pfam14941   
Conserved Domain (NCBI)OAF
DMDM Disease mutations220323
Blocks (Seattle)OAF
SuperfamilyQ86UD1
Peptide AtlasQ86UD1
HPRD17646
IPIIPI00328703   IPI00979582   
Protein Interaction databases
DIP (DOE-UCLA)Q86UD1
IntAct (EBI)Q86UD1
BioGRIDOAF
STRING (EMBL)OAF
ZODIACOAF
Ontologies - Pathways
QuickGOQ86UD1
Ontology : AmiGOextracellular exosome  
Ontology : EGO-EBIextracellular exosome  
NDEx NetworkOAF
Atlas of Cancer Signalling NetworkOAF
Wikipedia pathwaysOAF
Orthology - Evolution
OrthoDB220323
Phylogenetic Trees/Animal Genes : TreeFamOAF
HOVERGENQ86UD1
HOGENOMQ86UD1
Homologs : HomoloGeneOAF
Homology/Alignments : Family Browser (UCSC)OAF
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOAF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OAF
dbVarOAF
ClinVarOAF
1000_GenomesOAF 
Exome Variant ServerOAF
ExAC (Exome Aggregation Consortium)OAF (select the gene name)
Genetic variants : HAPMAP220323
Genomic Variants (DGV)OAF [DGVbeta]
DECIPHEROAF [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOAF 
Mutations
ICGC Data PortalOAF 
TCGA Data PortalOAF 
Broad Tumor PortalOAF
OASIS PortalOAF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOAF  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOAF
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OAF
DgiDB (Drug Gene Interaction Database)OAF
DoCM (Curated mutations)OAF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OAF (select a term)
intoGenOAF
Cancer3DOAF(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOAF
Genetic Testing Registry OAF
NextProtQ86UD1 [Medical]
TSGene220323
GENETestsOAF
Target ValidationOAF
Huge Navigator OAF [HugePedia]
snp3D : Map Gene to Disease220323
BioCentury BCIQOAF
ClinGenOAF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD220323
Chemical/Pharm GKB GenePA142671234
Clinical trialOAF
Miscellaneous
canSAR (ICR)OAF (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOAF
EVEXOAF
GoPubMedOAF
iHOPOAF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:32:33 CEST 2017
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