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OAF (out at first homolog)

Identity

Alias (NCBI)NS5ATP13TP2
HGNC (Hugo) OAF
HGNC Alias symbMGC52117
HGNC Previous nameOAF homolog (Drosophila)
LocusID (NCBI) 220323
Atlas_Id 71079
Location 11q23.3  [Link to chromosome band 11q23]
Location_base_pair Starts at 120210975 and ends at 120230332 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AUTS2 (7q11.22) / OAF (11q23.3)OAF (11q23.3) / ARHGEF1 (19q13.2)OAF (11q23.3) / AUTS2 (7q11.22)
OAF (11q23.3) / CDK19 (6q21)OAF (11q23.3) / SLC26A11 (17q25.3)SLC26A11 (17q25.3) / OAF (11q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(11;17)(q23;q25) OAF/SLC26A11
t(11;17)(q23;q25) SLC26A11/OAF

External links

Nomenclature
HGNC (Hugo)OAF   28752
Cards
Entrez_Gene (NCBI)OAF    out at first homolog
AliasesNS5ATP13TP2
GeneCards (Weizmann)OAF
Ensembl hg19 (Hinxton)ENSG00000184232 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184232 [Gene_View]  ENSG00000184232 [Sequence]  chr11:120210975-120230332 [Contig_View]  OAF [Vega]
ICGC DataPortalENSG00000184232
TCGA cBioPortalOAF
AceView (NCBI)OAF
Genatlas (Paris)OAF
SOURCE (Princeton)OAF
Genetics Home Reference (NIH)OAF
Genomic and cartography
GoldenPath hg38 (UCSC)OAF  -     chr11:120210975-120230332 +  11q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OAF  -     11q23.3   [Description]    (hg19-Feb_2009)
GoldenPathOAF - 11q23.3 [CytoView hg19]  OAF - 11q23.3 [CytoView hg38]
ImmunoBaseENSG00000184232
genome Data Viewer NCBIOAF [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AA902624 AI733095 AY459296 BC008339 BC047726
RefSeq transcript (Entrez)NM_178507
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OAF
Alternative Splicing GalleryENSG00000184232
Gene ExpressionOAF [ NCBI-GEO ]   OAF [ EBI - ARRAY_EXPRESS ]   OAF [ SEEK ]   OAF [ MEM ]
Gene Expression Viewer (FireBrowse)OAF [ Firebrowse - Broad ]
GenevisibleExpression of OAF in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)220323
GTEX Portal (Tissue expression)OAF
Human Protein AtlasENSG00000184232-OAF [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86UD1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86UD1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86UD1
Splice isoforms : SwissVarQ86UD1
PhosPhoSitePlusQ86UD1
Domains : Interpro (EBI)Oaf   
Domain families : Pfam (Sanger)OAF (PF14941)   
Domain families : Pfam (NCBI)pfam14941   
Conserved Domain (NCBI)OAF
Blocks (Seattle)OAF
SuperfamilyQ86UD1
Human Protein Atlas [tissue]ENSG00000184232-OAF [tissue]
Peptide AtlasQ86UD1
HPRD17646
IPIIPI00328703   IPI00979582   
Protein Interaction databases
DIP (DOE-UCLA)Q86UD1
IntAct (EBI)Q86UD1
BioGRIDOAF
STRING (EMBL)OAF
ZODIACOAF
Ontologies - Pathways
QuickGOQ86UD1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkOAF
Atlas of Cancer Signalling NetworkOAF
Wikipedia pathwaysOAF
Orthology - Evolution
OrthoDB220323
GeneTree (enSembl)ENSG00000184232
Phylogenetic Trees/Animal Genes : TreeFamOAF
HOGENOMQ86UD1
Homologs : HomoloGeneOAF
Homology/Alignments : Family Browser (UCSC)OAF
Gene fusions - Rearrangements
Fusion : QuiverOAF
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOAF [hg38]
dbVarOAF
ClinVarOAF
MonarchOAF
1000_GenomesOAF 
Exome Variant ServerOAF
GNOMAD BrowserENSG00000184232
Varsome BrowserOAF
Genomic Variants (DGV)OAF [DGVbeta]
DECIPHEROAF [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOAF 
Mutations
ICGC Data PortalOAF 
TCGA Data PortalOAF 
Broad Tumor PortalOAF
OASIS PortalOAF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOAF  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DOAF
Mutations and Diseases : HGMDOAF
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OAF
DgiDB (Drug Gene Interaction Database)OAF
DoCM (Curated mutations)OAF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OAF (select a term)
intoGenOAF
Cancer3DOAF(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOAF
MedgenOAF
Genetic Testing Registry OAF
NextProtQ86UD1 [Medical]
GENETestsOAF
Target ValidationOAF
Huge Navigator OAF [HugePedia]
ClinGenOAF
Clinical trials, drugs, therapy
MyCancerGenomeOAF
Protein Interactions : CTD
Pharm GKB GenePA142671234
Clinical trialOAF
Miscellaneous
canSAR (ICR)OAF (select the gene name)
HarmonizomeOAF
DataMed IndexOAF
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOAF
EVEXOAF
GoPubMedOAF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:19:49 CET 2020
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