Atlas of Genetics and Cytogenetics in Oncology and Haematology


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OBFC1 (oligonucleotide/oligosaccharide-binding fold containing 1)

Identity

Other aliasAAF-44
AAF44
RPA-32
STN1
bA541N10.2
HGNC (Hugo) OBFC1
LocusID (NCBI) 79991
Atlas_Id 71086
Location 10q24.33  [Link to chromosome band 10q24]
Location_base_pair Starts at 105637318 and ends at 105678045 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ACTR1A (10q24.32) / OBFC1 (10q24.33)OBFC1 (10q24.33) / CCSER2 (10q23.1)OBFC1 (10q24.33) / OBFC1 (10q24.33)
SH3PXD2A (10q24.33) / OBFC1 (10q24.33)SH3PXD2A OBFC1ACTR1A OBFC1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OBFC1   26200
Cards
Entrez_Gene (NCBI)OBFC1  79991  oligonucleotide/oligosaccharide-binding fold containing 1
AliasesAAF-44; AAF44; RPA-32; STN1; 
bA541N10.2
GeneCards (Weizmann)OBFC1
Ensembl hg19 (Hinxton) [Gene_View]  chr10:105637318-105678045 [Contig_View]  OBFC1 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr10:105637318-105678045 [Contig_View]  OBFC1 [Vega]
TCGA cBioPortalOBFC1
AceView (NCBI)OBFC1
Genatlas (Paris)OBFC1
WikiGenes79991
SOURCE (Princeton)OBFC1
Genetics Home Reference (NIH)OBFC1
Genomic and cartography
GoldenPath hg19 (UCSC)OBFC1  -     chr10:105637318-105678045 -  10q24.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OBFC1  -     10q24.33   [Description]    (hg38-Dec_2013)
EnsemblOBFC1 - 10q24.33 [CytoView hg19]  OBFC1 - 10q24.33 [CytoView hg38]
Mapping of homologs : NCBIOBFC1 [Mapview hg19]  OBFC1 [Mapview hg38]
OMIM613128   
Gene and transcription
Genbank (Entrez)AK026212 AK057720 BC017400 HG503231 HQ448216
RefSeq transcript (Entrez)NM_024928
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)OBFC1
Cluster EST : UnigeneHs.62314 [ NCBI ]
CGAP (NCI)Hs.62314
Gene ExpressionOBFC1 [ NCBI-GEO ]   OBFC1 [ EBI - ARRAY_EXPRESS ]   OBFC1 [ SEEK ]   OBFC1 [ MEM ]
Gene Expression Viewer (FireBrowse)OBFC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79991
GTEX Portal (Tissue expression)OBFC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H668   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H668  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H668
Splice isoforms : SwissVarQ9H668
PhosPhoSitePlusQ9H668
Domains : Interpro (EBI)CST_STN1    CST_STN1_C    NA-bd_OB-fold    NA-bd_OB_tRNA   
Domain families : Pfam (Sanger)STN1_2 (PF09170)    tRNA_anti-codon (PF01336)   
Domain families : Pfam (NCBI)pfam09170    pfam01336   
Conserved Domain (NCBI)OBFC1
DMDM Disease mutations79991
Blocks (Seattle)OBFC1
PDB (SRS)4JOI    4JQF   
PDB (PDBSum)4JOI    4JQF   
PDB (IMB)4JOI    4JQF   
PDB (RSDB)4JOI    4JQF   
Structural Biology KnowledgeBase4JOI    4JQF   
SCOP (Structural Classification of Proteins)4JOI    4JQF   
CATH (Classification of proteins structures)4JOI    4JQF   
SuperfamilyQ9H668
Peptide AtlasQ9H668
HPRD14872
IPIIPI00554443   
Protein Interaction databases
DIP (DOE-UCLA)Q9H668
IntAct (EBI)Q9H668
BioGRIDOBFC1
STRING (EMBL)OBFC1
ZODIACOBFC1
Ontologies - Pathways
QuickGOQ9H668
Ontology : AmiGOtelomere maintenance  nuclear chromosome, telomeric region  single-stranded DNA binding  protein binding  nucleus  nucleus  nucleoplasm  nucleolus  telomere maintenance via telomere lengthening  single-stranded telomeric DNA binding  intracellular membrane-bounded organelle  intermediate filament cytoskeleton  positive regulation of DNA replication  Stn1-Ten1 complex  
Ontology : EGO-EBItelomere maintenance  nuclear chromosome, telomeric region  single-stranded DNA binding  protein binding  nucleus  nucleus  nucleoplasm  nucleolus  telomere maintenance via telomere lengthening  single-stranded telomeric DNA binding  intracellular membrane-bounded organelle  intermediate filament cytoskeleton  positive regulation of DNA replication  Stn1-Ten1 complex  
NDEx NetworkOBFC1
Atlas of Cancer Signalling NetworkOBFC1
Wikipedia pathwaysOBFC1
Orthology - Evolution
OrthoDB79991
Phylogenetic Trees/Animal Genes : TreeFamOBFC1
HOVERGENQ9H668
HOGENOMQ9H668
Homologs : HomoloGeneOBFC1
Homology/Alignments : Family Browser (UCSC)OBFC1
Gene fusions - Rearrangements
Fusion: TCGASH3PXD2A OBFC1
Fusion: TCGAACTR1A OBFC1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOBFC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OBFC1
dbVarOBFC1
ClinVarOBFC1
1000_GenomesOBFC1 
Exome Variant ServerOBFC1
ExAC (Exome Aggregation Consortium)OBFC1 (select the gene name)
Genetic variants : HAPMAP79991
Genomic Variants (DGV)OBFC1 [DGVbeta]
DECIPHER (Syndromes)10:105637318-105678045  
CONAN: Copy Number AnalysisOBFC1 
Mutations
ICGC Data PortalOBFC1 
TCGA Data PortalOBFC1 
Broad Tumor PortalOBFC1
OASIS PortalOBFC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOBFC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOBFC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OBFC1
DgiDB (Drug Gene Interaction Database)OBFC1
DoCM (Curated mutations)OBFC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OBFC1 (select a term)
intoGenOBFC1
Cancer3DOBFC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613128   
Orphanet7029   
MedgenOBFC1
Genetic Testing Registry OBFC1
NextProtQ9H668 [Medical]
TSGene79991
GENETestsOBFC1
Huge Navigator OBFC1 [HugePedia]
snp3D : Map Gene to Disease79991
BioCentury BCIQOBFC1
ClinGenOBFC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79991
Chemical/Pharm GKB GenePA134987118
Clinical trialOBFC1
Miscellaneous
canSAR (ICR)OBFC1 (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOBFC1
EVEXOBFC1
GoPubMedOBFC1
iHOPOBFC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:35:45 CET 2017

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