Atlas of Genetics and Cytogenetics in Oncology and Haematology


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OBI1 (ORC ubiquitin ligase 1)

Identity

Alias (NCBI)C13orf7
RNF219
HGNC (Hugo) OBI1
HGNC Alias symbFLJ13449
HGNC Previous nameC13orf7
HGNC Previous namechromosome 13 open reading frame 7
LocusID (NCBI) 79596
Atlas_Id 72708
Location 13q31.1  [Link to chromosome band 13q31]
Location_base_pair Starts at 78614289 and ends at 78659155 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

 

Nomenclature
HGNC (Hugo)OBI1   20308
Cards
Entrez_Gene (NCBI)OBI1    ORC ubiquitin ligase 1
AliasesC13orf7; RNF219
GeneCards (Weizmann)OBI1
Ensembl hg19 (Hinxton)ENSG00000152193 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000152193 [Gene_View]  ENSG00000152193 [Sequence]  chr13:78614289-78659155 [Contig_View]  OBI1 [Vega]
ICGC DataPortalENSG00000152193
TCGA cBioPortalOBI1
AceView (NCBI)OBI1
Genatlas (Paris)OBI1
SOURCE (Princeton)OBI1
Genetics Home Reference (NIH)OBI1
Genomic and cartography
GoldenPath hg38 (UCSC)OBI1  -     chr13:78614289-78659155 -  13q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OBI1  -     13q31.1   [Description]    (hg19-Feb_2009)
GoldenPathOBI1 - 13q31.1 [CytoView hg19]  OBI1 - 13q31.1 [CytoView hg38]
ImmunoBaseENSG00000152193
Genome Data Viewer NCBIOBI1 [Mapview hg19]  
OMIM615906   
Gene and transcription
Genbank (Entrez)AK023511 AK098640 AL136651 BC028586 BC136764
RefSeq transcript (Entrez)NM_024546
Consensus coding sequences : CCDS (NCBI)OBI1
Gene ExpressionOBI1 [ NCBI-GEO ]   OBI1 [ EBI - ARRAY_EXPRESS ]   OBI1 [ SEEK ]   OBI1 [ MEM ]
Gene Expression Viewer (FireBrowse)OBI1 [ Firebrowse - Broad ]
GenevisibleExpression of OBI1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79596
GTEX Portal (Tissue expression)OBI1
Human Protein AtlasENSG00000152193-OBI1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5W0B1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5W0B1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5W0B1
PhosPhoSitePlusQ5W0B1
Domaine pattern : Prosite (Expaxy)ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)OBI1    RNF219_RING-HC    Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OBI1
SuperfamilyQ5W0B1
AlphaFold pdb e-kbQ5W0B1   
Human Protein Atlas [tissue]ENSG00000152193-OBI1 [tissue]
HPRD12619
Protein Interaction databases
DIP (DOE-UCLA)Q5W0B1
IntAct (EBI)Q5W0B1
BioGRIDOBI1
STRING (EMBL)OBI1
ZODIACOBI1
Ontologies - Pathways
QuickGOQ5W0B1
Ontology : AmiGOchromatin  chromatin binding  ubiquitin-protein transferase activity  protein binding  regulation of DNA replication  protein monoubiquitination  metal ion binding  protein autoubiquitination  
Ontology : EGO-EBIchromatin  chromatin binding  ubiquitin-protein transferase activity  protein binding  regulation of DNA replication  protein monoubiquitination  metal ion binding  protein autoubiquitination  
NDEx NetworkOBI1
Atlas of Cancer Signalling NetworkOBI1
Wikipedia pathwaysOBI1
Orthology - Evolution
OrthoDB79596
GeneTree (enSembl)ENSG00000152193
Phylogenetic Trees/Animal Genes : TreeFamOBI1
Homologs : HomoloGeneOBI1
Homology/Alignments : Family Browser (UCSC)OBI1
Gene fusions - Rearrangements
Fusion : QuiverOBI1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOBI1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OBI1
dbVarOBI1
ClinVarOBI1
MonarchOBI1
1000_GenomesOBI1 
Exome Variant ServerOBI1
GNOMAD BrowserENSG00000152193
Varsome BrowserOBI1
ACMGOBI1 variants
VarityQ5W0B1
Genomic Variants (DGV)OBI1 [DGVbeta]
DECIPHEROBI1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOBI1 
Mutations
ICGC Data PortalOBI1 
TCGA Data PortalOBI1 
Broad Tumor PortalOBI1
OASIS PortalOBI1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDOBI1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaOBI1
DgiDB (Drug Gene Interaction Database)OBI1
DoCM (Curated mutations)OBI1
CIViC (Clinical Interpretations of Variants in Cancer)OBI1
Cancer3DOBI1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615906   
Orphanet
DisGeNETOBI1
MedgenOBI1
Genetic Testing Registry OBI1
NextProtQ5W0B1 [Medical]
GENETestsOBI1
Target ValidationOBI1
Huge Navigator OBI1 [HugePedia]
ClinGenOBI1
Clinical trials, drugs, therapy
MyCancerGenomeOBI1
Protein Interactions : CTDOBI1
Pharm GKB GenePA162401869
PharosQ5W0B1
Clinical trialOBI1
Miscellaneous
canSAR (ICR)OBI1
HarmonizomeOBI1
ARCHS4OBI1
DataMed IndexOBI1
Probes
Litterature
PubMed52 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXOBI1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 20 13:43:15 CET 2022

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