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OBP2A (odorant binding protein 2A)

Identity

Alias_symbol (synonym)hOBPIIa
OBP
LCN13
Other aliasOBP2C
OBPIIa
HGNC (Hugo) OBP2A
LocusID (NCBI) 29991
Atlas_Id 71087
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 135546139 and ends at 135549969 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OBP2A   23380
Cards
Entrez_Gene (NCBI)OBP2A  29991  odorant binding protein 2A
AliasesLCN13; OBP; OBP2C; OBPIIa; 
hOBPIIa
GeneCards (Weizmann)OBP2A
Ensembl hg19 (Hinxton)ENSG00000122136 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122136 [Gene_View]  chr9:135546139-135549969 [Contig_View]  OBP2A [Vega]
ICGC DataPortalENSG00000122136
TCGA cBioPortalOBP2A
AceView (NCBI)OBP2A
Genatlas (Paris)OBP2A
WikiGenes29991
SOURCE (Princeton)OBP2A
Genetics Home Reference (NIH)OBP2A
Genomic and cartography
GoldenPath hg38 (UCSC)OBP2A  -     chr9:135546139-135549969 +  9q34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OBP2A  -     9q34.3   [Description]    (hg19-Feb_2009)
EnsemblOBP2A - 9q34.3 [CytoView hg19]  OBP2A - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBIOBP2A [Mapview hg19]  OBP2A [Mapview hg38]
OMIM164320   
Gene and transcription
Genbank (Entrez)AI219510 AJ251021 AJ251022 AJ251023 AJ251024
RefSeq transcript (Entrez)NM_001293189 NM_001293193 NM_014582
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OBP2A
Cluster EST : UnigeneHs.567489 [ NCBI ]
CGAP (NCI)Hs.567489
Alternative Splicing GalleryENSG00000122136
Gene ExpressionOBP2A [ NCBI-GEO ]   OBP2A [ EBI - ARRAY_EXPRESS ]   OBP2A [ SEEK ]   OBP2A [ MEM ]
Gene Expression Viewer (FireBrowse)OBP2A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29991
GTEX Portal (Tissue expression)OBP2A
Human Protein AtlasENSG00000122136-OBP2A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NY56   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NY56  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NY56
Splice isoforms : SwissVarQ9NY56
PhosPhoSitePlusQ9NY56
Domains : Interpro (EBI)Calycin    Calycin-like    Lipocln_cytosolic_FA-bd_dom    von_Ebner_gland   
Domain families : Pfam (Sanger)Lipocalin (PF00061)   
Domain families : Pfam (NCBI)pfam00061   
Conserved Domain (NCBI)OBP2A
DMDM Disease mutations29991
Blocks (Seattle)OBP2A
PDB (SRS)4RUN   
PDB (PDBSum)4RUN   
PDB (IMB)4RUN   
PDB (RSDB)4RUN   
Structural Biology KnowledgeBase4RUN   
SCOP (Structural Classification of Proteins)4RUN   
CATH (Classification of proteins structures)4RUN   
SuperfamilyQ9NY56
Human Protein Atlas [tissue]ENSG00000122136-OBP2A [tissue]
Peptide AtlasQ9NY56
HPRD01253
IPIIPI00005153   IPI00221280   IPI00221281   IPI00221282   IPI00514003   IPI01017880   IPI00514707   IPI01010657   
Protein Interaction databases
DIP (DOE-UCLA)Q9NY56
IntAct (EBI)Q9NY56
FunCoupENSG00000122136
BioGRIDOBP2A
STRING (EMBL)OBP2A
ZODIACOBP2A
Ontologies - Pathways
QuickGOQ9NY56
Ontology : AmiGOodorant binding  cellular_component  extracellular region  transport  sensory perception of chemical stimulus  sensory perception of smell  response to stimulus  
Ontology : EGO-EBIodorant binding  cellular_component  extracellular region  transport  sensory perception of chemical stimulus  sensory perception of smell  response to stimulus  
NDEx NetworkOBP2A
Atlas of Cancer Signalling NetworkOBP2A
Wikipedia pathwaysOBP2A
Orthology - Evolution
OrthoDB29991
GeneTree (enSembl)ENSG00000122136
Phylogenetic Trees/Animal Genes : TreeFamOBP2A
HOVERGENQ9NY56
HOGENOMQ9NY56
Homologs : HomoloGeneOBP2A
Homology/Alignments : Family Browser (UCSC)OBP2A
Gene fusions - Rearrangements
Fusion: Tumor Portal OBP2A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOBP2A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OBP2A
dbVarOBP2A
ClinVarOBP2A
1000_GenomesOBP2A 
Exome Variant ServerOBP2A
ExAC (Exome Aggregation Consortium)ENSG00000122136
GNOMAD BrowserENSG00000122136
Genetic variants : HAPMAP29991
Genomic Variants (DGV)OBP2A [DGVbeta]
DECIPHEROBP2A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOBP2A 
Mutations
ICGC Data PortalOBP2A 
TCGA Data PortalOBP2A 
Broad Tumor PortalOBP2A
OASIS PortalOBP2A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOBP2A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOBP2A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OBP2A
DgiDB (Drug Gene Interaction Database)OBP2A
DoCM (Curated mutations)OBP2A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OBP2A (select a term)
intoGenOBP2A
Cancer3DOBP2A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM164320   
Orphanet
MedgenOBP2A
Genetic Testing Registry OBP2A
NextProtQ9NY56 [Medical]
TSGene29991
GENETestsOBP2A
Target ValidationOBP2A
Huge Navigator OBP2A [HugePedia]
snp3D : Map Gene to Disease29991
BioCentury BCIQOBP2A
ClinGenOBP2A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29991
Chemical/Pharm GKB GenePA134915019
Clinical trialOBP2A
Miscellaneous
canSAR (ICR)OBP2A (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOBP2A
EVEXOBP2A
GoPubMedOBP2A
iHOPOBP2A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:19:45 CET 2017

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