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OBP2B (odorant binding protein 2B)

Identity

Alias_symbol (synonym)hOBPIIb
LCN14
Other aliasOBPIIb
HGNC (Hugo) OBP2B
LocusID (NCBI) 29989
Atlas_Id 54515
Location 9q34.2  [Link to chromosome band 9q34]
Location_base_pair Starts at 133205279 and ends at 133209250 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CACNA1G (17q21.33) / OBP2B (9q34.2)NR6A1 (9q33.3) / OBP2B (9q34.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OBP2B   23381
Cards
Entrez_Gene (NCBI)OBP2B  29989  odorant binding protein 2B
AliasesLCN14; OBPIIb
GeneCards (Weizmann)OBP2B
Ensembl hg19 (Hinxton)ENSG00000171102 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171102 [Gene_View]  chr9:133205279-133209250 [Contig_View]  OBP2B [Vega]
ICGC DataPortalENSG00000171102
TCGA cBioPortalOBP2B
AceView (NCBI)OBP2B
Genatlas (Paris)OBP2B
WikiGenes29989
SOURCE (Princeton)OBP2B
Genetics Home Reference (NIH)OBP2B
Genomic and cartography
GoldenPath hg38 (UCSC)OBP2B  -     chr9:133205279-133209250 -  9q34.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OBP2B  -     9q34.2   [Description]    (hg19-Feb_2009)
EnsemblOBP2B - 9q34.2 [CytoView hg19]  OBP2B - 9q34.2 [CytoView hg38]
Mapping of homologs : NCBIOBP2B [Mapview hg19]  OBP2B [Mapview hg38]
OMIM604606   
Gene and transcription
Genbank (Entrez)AI251747 AJ251026 AJ251027 AJ251028 AW513637
RefSeq transcript (Entrez)NM_001288987 NM_014581
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OBP2B
Cluster EST : UnigeneHs.449629 [ NCBI ]
CGAP (NCI)Hs.449629
Alternative Splicing GalleryENSG00000171102
Gene ExpressionOBP2B [ NCBI-GEO ]   OBP2B [ EBI - ARRAY_EXPRESS ]   OBP2B [ SEEK ]   OBP2B [ MEM ]
Gene Expression Viewer (FireBrowse)OBP2B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29989
GTEX Portal (Tissue expression)OBP2B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NPH6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NPH6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NPH6
Splice isoforms : SwissVarQ9NPH6
PhosPhoSitePlusQ9NPH6
Domains : Interpro (EBI)Calycin    Calycin-like    Lipocln_cytosolic_FA-bd_dom    von_Ebner_gland   
Domain families : Pfam (Sanger)Lipocalin (PF00061)   
Domain families : Pfam (NCBI)pfam00061   
Conserved Domain (NCBI)OBP2B
DMDM Disease mutations29989
Blocks (Seattle)OBP2B
SuperfamilyQ9NPH6
Human Protein AtlasENSG00000171102
Peptide AtlasQ9NPH6
HPRD05209
IPIIPI00005151   IPI00220225   IPI00220227   IPI00744427   
Protein Interaction databases
DIP (DOE-UCLA)Q9NPH6
IntAct (EBI)Q9NPH6
FunCoupENSG00000171102
BioGRIDOBP2B
STRING (EMBL)OBP2B
ZODIACOBP2B
Ontologies - Pathways
QuickGOQ9NPH6
Ontology : AmiGOodorant binding  cellular_component  extracellular region  transport  sensory perception of smell  chemosensory behavior  
Ontology : EGO-EBIodorant binding  cellular_component  extracellular region  transport  sensory perception of smell  chemosensory behavior  
NDEx NetworkOBP2B
Atlas of Cancer Signalling NetworkOBP2B
Wikipedia pathwaysOBP2B
Orthology - Evolution
OrthoDB29989
GeneTree (enSembl)ENSG00000171102
Phylogenetic Trees/Animal Genes : TreeFamOBP2B
HOVERGENQ9NPH6
HOGENOMQ9NPH6
Homologs : HomoloGeneOBP2B
Homology/Alignments : Family Browser (UCSC)OBP2B
Gene fusions - Rearrangements
Fusion : MitelmanNR6A1/OBP2B [9q33.3/9q34.2]  [t(9;9)(q33;q34)]  
Fusion Cancer (Beijing)CACNA1G [17q21.33]  -  OBP2B [9q34.2]  [FUSC002449]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOBP2B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OBP2B
dbVarOBP2B
ClinVarOBP2B
1000_GenomesOBP2B 
Exome Variant ServerOBP2B
ExAC (Exome Aggregation Consortium)OBP2B (select the gene name)
Genetic variants : HAPMAP29989
Genomic Variants (DGV)OBP2B [DGVbeta]
DECIPHEROBP2B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOBP2B 
Mutations
ICGC Data PortalOBP2B 
TCGA Data PortalOBP2B 
Broad Tumor PortalOBP2B
OASIS PortalOBP2B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOBP2B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOBP2B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OBP2B
DgiDB (Drug Gene Interaction Database)OBP2B
DoCM (Curated mutations)OBP2B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OBP2B (select a term)
intoGenOBP2B
Cancer3DOBP2B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604606   
Orphanet
MedgenOBP2B
Genetic Testing Registry OBP2B
NextProtQ9NPH6 [Medical]
TSGene29989
GENETestsOBP2B
Target ValidationOBP2B
Huge Navigator OBP2B [HugePedia]
snp3D : Map Gene to Disease29989
BioCentury BCIQOBP2B
ClinGenOBP2B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29989
Chemical/Pharm GKB GenePA134883553
Clinical trialOBP2B
Miscellaneous
canSAR (ICR)OBP2B (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOBP2B
EVEXOBP2B
GoPubMedOBP2B
iHOPOBP2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:23:03 CEST 2017

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