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OBSCN-AS1 (OBSCN antisense RNA 1)

Identity

Alias_namesC1orf145
chromosome 1 open reading frame 145
Alias_symbol (synonym)FLJ31994
Other alias
HGNC (Hugo) OBSCN-AS1
LocusID (NCBI) 574407
Atlas_Id 80014
Location 1q42.13  [Link to chromosome band 1q42]
Location_base_pair Starts at 228204475 and ends at 228213664 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)OBSCN-AS1   32047
Cards
Entrez_Gene (NCBI)OBSCN-AS1  574407  OBSCN antisense RNA 1
AliasesC1orf145
GeneCards (Weizmann)OBSCN-AS1
Ensembl hg19 (Hinxton)ENSG00000162913 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162913 [Gene_View]  chr1:228204475-228213664 [Contig_View]  OBSCN-AS1 [Vega]
ICGC DataPortalENSG00000162913
TCGA cBioPortalOBSCN-AS1
AceView (NCBI)OBSCN-AS1
Genatlas (Paris)OBSCN-AS1
WikiGenes574407
SOURCE (Princeton)OBSCN-AS1
Genetics Home Reference (NIH)OBSCN-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)OBSCN-AS1  -     chr1:228204475-228213664 -  1q42.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OBSCN-AS1  -     1q42.13   [Description]    (hg19-Feb_2009)
EnsemblOBSCN-AS1 - 1q42.13 [CytoView hg19]  OBSCN-AS1 - 1q42.13 [CytoView hg38]
Mapping of homologs : NCBIOBSCN-AS1 [Mapview hg19]  OBSCN-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056556 BC027909
RefSeq transcript (Entrez)NM_001025495
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OBSCN-AS1
Cluster EST : UnigeneHs.650039 [ NCBI ]
CGAP (NCI)Hs.650039
Alternative Splicing GalleryENSG00000162913
Gene ExpressionOBSCN-AS1 [ NCBI-GEO ]   OBSCN-AS1 [ EBI - ARRAY_EXPRESS ]   OBSCN-AS1 [ SEEK ]   OBSCN-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)OBSCN-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)574407
GTEX Portal (Tissue expression)OBSCN-AS1
Human Protein AtlasENSG00000162913-OBSCN-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MR7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96MR7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96MR7
Splice isoforms : SwissVarQ96MR7
PhosPhoSitePlusQ96MR7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OBSCN-AS1
DMDM Disease mutations574407
Blocks (Seattle)OBSCN-AS1
SuperfamilyQ96MR7
Human Protein Atlas [tissue]ENSG00000162913-OBSCN-AS1 [tissue]
Peptide AtlasQ96MR7
IPIIPI00043304   IPI00166503   IPI00981483   
Protein Interaction databases
DIP (DOE-UCLA)Q96MR7
IntAct (EBI)Q96MR7
FunCoupENSG00000162913
BioGRIDOBSCN-AS1
STRING (EMBL)OBSCN-AS1
ZODIACOBSCN-AS1
Ontologies - Pathways
QuickGOQ96MR7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkOBSCN-AS1
Atlas of Cancer Signalling NetworkOBSCN-AS1
Wikipedia pathwaysOBSCN-AS1
Orthology - Evolution
OrthoDB574407
GeneTree (enSembl)ENSG00000162913
Phylogenetic Trees/Animal Genes : TreeFamOBSCN-AS1
HOVERGENQ96MR7
HOGENOMQ96MR7
Homologs : HomoloGeneOBSCN-AS1
Homology/Alignments : Family Browser (UCSC)OBSCN-AS1
Gene fusions - Rearrangements
Tumor Fusion PortalOBSCN-AS1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOBSCN-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OBSCN-AS1
dbVarOBSCN-AS1
ClinVarOBSCN-AS1
1000_GenomesOBSCN-AS1 
Exome Variant ServerOBSCN-AS1
ExAC (Exome Aggregation Consortium)ENSG00000162913
GNOMAD BrowserENSG00000162913
Genetic variants : HAPMAP574407
Genomic Variants (DGV)OBSCN-AS1 [DGVbeta]
DECIPHEROBSCN-AS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOBSCN-AS1 
Mutations
ICGC Data PortalOBSCN-AS1 
TCGA Data PortalOBSCN-AS1 
Broad Tumor PortalOBSCN-AS1
OASIS PortalOBSCN-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDOBSCN-AS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OBSCN-AS1
DgiDB (Drug Gene Interaction Database)OBSCN-AS1
DoCM (Curated mutations)OBSCN-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OBSCN-AS1 (select a term)
intoGenOBSCN-AS1
Cancer3DOBSCN-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOBSCN-AS1
MedgenOBSCN-AS1
Genetic Testing Registry OBSCN-AS1
NextProtQ96MR7 [Medical]
TSGene574407
GENETestsOBSCN-AS1
Target ValidationOBSCN-AS1
Huge Navigator OBSCN-AS1 [HugePedia]
snp3D : Map Gene to Disease574407
BioCentury BCIQOBSCN-AS1
ClinGenOBSCN-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD574407
Chemical/Pharm GKB GenePA142672462
Clinical trialOBSCN-AS1
Miscellaneous
canSAR (ICR)OBSCN-AS1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOBSCN-AS1
EVEXOBSCN-AS1
GoPubMedOBSCN-AS1
iHOPOBSCN-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:02:00 CET 2017

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