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OBSCN (obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF)

Identity

Alias (NCBI)ARHGEF30
UNC89
HGNC (Hugo) OBSCN
HGNC Alias symbKIAA1556
UNC89
KIAA1639
ARHGEF30
LocusID (NCBI) 84033
Atlas_Id 43385
Location 1q42.13  [Link to chromosome band 1q42]
Location_base_pair Starts at 228208044 and ends at 228361250 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CIRBP-AS1 (19p13.3) / OBSCN (1q42.13)OBSCN (1q42.13) / CASZ1 (1p36.22)OBSCN (1q42.13) / DISC1 (1q42.2)
OBSCN (1q42.13) / IGSF21 (1p36.13)RNF187 (1q42.13) / OBSCN (1q42.13)OBSCN 1q42.13 / CASZ1 1p36.22
OBSCN 1q42.13 / DISC1 1q42.2OBSCN 1q42.13 / IGSF21 1p36.13

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)OBSCN   15719
LRG (Locus Reference Genomic)LRG_412
Cards
Entrez_Gene (NCBI)OBSCN    obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF
AliasesARHGEF30; UNC89
GeneCards (Weizmann)OBSCN
Ensembl hg19 (Hinxton)ENSG00000154358 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000154358 [Gene_View]  ENSG00000154358 [Sequence]  chr1:228208044-228361250 [Contig_View]  OBSCN [Vega]
ICGC DataPortalENSG00000154358
TCGA cBioPortalOBSCN
AceView (NCBI)OBSCN
Genatlas (Paris)OBSCN
SOURCE (Princeton)OBSCN
Genetics Home Reference (NIH)OBSCN
Genomic and cartography
GoldenPath hg38 (UCSC)OBSCN  -     chr1:228208044-228361250 +  1q42.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OBSCN  -     1q42.13   [Description]    (hg19-Feb_2009)
GoldenPathOBSCN - 1q42.13 [CytoView hg19]  OBSCN - 1q42.13 [CytoView hg38]
ImmunoBaseENSG00000154358
Genome Data Viewer NCBIOBSCN [Mapview hg19]  
OMIM608616   
Gene and transcription
Genbank (Entrez)AB046776 AB046859 AJ002535 AK024186 AK097489
RefSeq transcript (Entrez)NM_001098623 NM_001271223 NM_001386125 NM_052843
Consensus coding sequences : CCDS (NCBI)OBSCN
Gene ExpressionOBSCN [ NCBI-GEO ]   OBSCN [ EBI - ARRAY_EXPRESS ]   OBSCN [ SEEK ]   OBSCN [ MEM ]
Gene Expression Viewer (FireBrowse)OBSCN [ Firebrowse - Broad ]
GenevisibleExpression of OBSCN in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84033
GTEX Portal (Tissue expression)OBSCN
Human Protein AtlasENSG00000154358-OBSCN [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OBSCN
Human Protein Atlas [tissue]ENSG00000154358-OBSCN [tissue]
HPRD08594
Protein Interaction databases
BioGRIDOBSCN
STRING (EMBL)OBSCN
ZODIACOBSCN
Ontologies - Pathways
Litterature
PubMed67 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXOBSCN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:23:39 CEST 2021

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