Atlas of Genetics and Cytogenetics in Oncology and Haematology


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OCEL1 (occludin/ELL domain containing 1)

Identity

Alias_symbol (synonym)FLJ22709
Other aliasFWP009
S863-9
HGNC (Hugo) OCEL1
LocusID (NCBI) 79629
Atlas_Id 71089
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 17226204 and ends at 17229219 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BABAM1 (19p13.11) / OCEL1 (19p13.11)OCEL1 (19p13.11) / SMARCA4 (19p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OCEL1   26221
Cards
Entrez_Gene (NCBI)OCEL1  79629  occludin/ELL domain containing 1
AliasesFWP009; S863-9
GeneCards (Weizmann)OCEL1
Ensembl hg19 (Hinxton)ENSG00000099330 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000099330 [Gene_View]  chr19:17226204-17229219 [Contig_View]  OCEL1 [Vega]
ICGC DataPortalENSG00000099330
TCGA cBioPortalOCEL1
AceView (NCBI)OCEL1
Genatlas (Paris)OCEL1
WikiGenes79629
SOURCE (Princeton)OCEL1
Genetics Home Reference (NIH)OCEL1
Genomic and cartography
GoldenPath hg38 (UCSC)OCEL1  -     chr19:17226204-17229219 +  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OCEL1  -     19p13.11   [Description]    (hg19-Feb_2009)
EnsemblOCEL1 - 19p13.11 [CytoView hg19]  OCEL1 - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBIOCEL1 [Mapview hg19]  OCEL1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF109191 AK026362 BC004121 BC029361 BC038945
RefSeq transcript (Entrez)NM_024578
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OCEL1
Cluster EST : UnigeneHs.422676 [ NCBI ]
CGAP (NCI)Hs.422676
Alternative Splicing GalleryENSG00000099330
Gene ExpressionOCEL1 [ NCBI-GEO ]   OCEL1 [ EBI - ARRAY_EXPRESS ]   OCEL1 >font!saze=-1> [ SEEK ]   OCEL1 [ MEM ]
Gene Expression Viewer (FireBrowse)OCEL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79629
GTEX Portal (Tissue expression)OCEL1
Human Protein AtlasENSG00000099330-OCEL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H607   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H607  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H607
Splice isoforms : SwissVarQ9H607
PhosPhoSitePlusQ9H607
Domains : Interpro (EBI)ELL/occludin    Occludin_ELL    Ocel1   
Domain families : Pfam (Sanger)Occludin_ELL (PF07303)   
Domain families : Pfam (NCBI)pfam07303   
Conserved Domain (NCBI)OCEL1
DMDM Disease mutations79629
Blocks (Seattle)OCEL1
SuperfamilyQ9H607
Human Protein Atlas [tissue]ENSG00000099330-OCEL1 [tissue]
Peptide AtlasQ9H607
HPRD08004
IPIIPI00002305   IPI00514698   IPI00449189   
Protein Interaction databases
DIP (DOE-UCLA)Q9H607
IntAct (EBI)Q9H607
FunCoupENSG00000099330
BioGRIDOCEL1
STRING (EMBL)OCEL1
ZODIACOCEL1
<\H` ALIGN=LEFT COLSPAN=1 BGCOLOR=#DDDDFC>Ontologies - Pathways
QuickGOQ9H607
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkOCEL1
Atlas of Cancer Signalling NetworkOCEL1
Wikipedia pathwaysOCEL1
Orthology - Evolution
OrthoDB79629
GeneTree (enSembl)ENSG00000099330
Phylogenetic Trees/Animal Genes : TreeFamOCEL1
HOVERGENQ9H607
HOGENOMQ9H607
Homologs : HomoloGeneOCEL1
Homology/Alignments : Family Browser (UCSC)OCEL1
Gene fusions - Rearrangements
Tumor Fusion PortalOCEL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOCEL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OCEL1
dbVarOCEL1
ClinVarOCEL1
1000_GenomesOCEL1 
Exome Variant ServerOCEL1
ExAC (Exome Aggregation Consortium)ENSG00000099330
GNOMAD BrowserENSG00000099330
Genetic variants : HAPMAP79629
Genomic Variants (DGV)OCEL1 [DGVbeta]
DECIPHEROCEL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOCEL1 
Mutations
ICGC Data PortalOCEL1 
TCGA Data PortalOCEL1 
.¯extdef.html#TUM_PORTAL TARGET=>Broad Tumor PortalOCEL1
OASIS PortalOCEL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOCEL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOCEL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OCEL1
DgiDB (Drug Gene Interaction Database)OCEL1
DoCM (Curated mutations)OCEL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OCEL1 (select a term)
intoGenOCEL1
Cancer3DOCEL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOCEL1
MedgenOCEL1
Genetic Testing Registry OCEL1
NextProtQ9H607 [Medical]
TSGene79629
GENETestsOCEL1
Target ValidationOCEL1
Huge Navigator OCEL1 [HugePedia]
snp3D : Map Gene to Disease79629
BioCentury BCIQOCEL1
ClinGenOCEL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79629
Chemical/Pharm GKB GenePA162398385
Clinical trialOCEL1
Miscellaneous
canSAR (ICR)OCEL1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOCEL1
EVEXOCEL1
GoPubMedOCEL1
iHOPOCEL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:04:06 CET 2017

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