Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OCIAD1 (OCIA domain containing 1)

Identity

Alias_symbol (synonym)FLJ20455
TPA018
OCIA
Asrij
Other aliasASRIJ
HGNC (Hugo) OCIAD1
LocusID (NCBI) 54940
Atlas_Id 41601
Location 4p11  [Link to chromosome band 4p11]
Location_base_pair Starts at 48833244 and ends at 48863834 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CARS2 (13q34) / OCIAD1 (4p11)OCIAD1 (4p11) / MTOR (1p36.22)OCIAD1 (4p11) / SH3GLB2 (9q34.11)
OCIAD1 (4p11) / ZBTB43 (9q33.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OCIAD1   16074
Cards
Entrez_Gene (NCBI)OCIAD1  54940  OCIA domain containing 1
AliasesASRIJ; OCIA; TPA018
GeneCards (Weizmann)OCIAD1
Ensembl hg19 (Hinxton)ENSG00000109180 [Gene_View]  chr4:48833244-48863834 [Contig_View]  OCIAD1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000109180 [Gene_View]  chr4:48833244-48863834 [Contig_View]  OCIAD1 [Vega]
ICGC DataPortalENSG00000109180
TCGA cBioPortalOCIAD1
AceView (NCBI)OCIAD1
Genatlas (Paris)OCIAD1
WikiGenes54940
SOURCE (Princeton)OCIAD1
Genetics Home Reference (NIH)OCIAD1
Genomic and cartography
GoldenPath hg19 (UCSC)OCIAD1  -     chr4:48833244-48863834 +  4p11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OCIAD1  -     4p11   [Description]    (hg38-Dec_2013)
EnsemblOCIAD1 - 4p11 [CytoView hg19]  OCIAD1 - 4p11 [CytoView hg38]
Mapping of homologs : NCBIOCIAD1 [Mapview hg19]  OCIAD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF251296 AF323665 AF324350 AI038315 AK000462
RefSeq transcript (Entrez)NM_001079839 NM_001079840 NM_001079841 NM_001079842 NM_001168254 NM_017830
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_006238 NW_004929317
Consensus coding sequences : CCDS (NCBI)OCIAD1
Cluster EST : UnigeneHs.518750 [ NCBI ]
CGAP (NCI)Hs.518750
Alternative Splicing GalleryENSG00000109180
Gene ExpressionOCIAD1 [ NCBI-GEO ]   OCIAD1 [ EBI - ARRAY_EXPRESS ]   OCIAD1 [ SEEK ]   OCIAD1 [ MEM ]
Gene Expression Viewer (FireBrowse)OCIAD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54940
GTEX Portal (Tissue expression)OCIAD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NX40   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NX40  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NX40
Splice isoforms : SwissVarQ9NX40
PhosPhoSitePlusQ9NX40
Domains : Interpro (EBI)OCIA   
Domain families : Pfam (Sanger)OCIA (PF07051)   
Domain families : Pfam (NCBI)pfam07051   
Conserved Domain (NCBI)OCIAD1
DMDM Disease mutations54940
Blocks (Seattle)OCIAD1
SuperfamilyQ9NX40
Human Protein AtlasENSG00000109180
Peptide AtlasQ9NX40
HPRD17654
IPIIPI00016405   IPI00816371   IPI01019018   IPI00954530   IPI00816523   IPI00966843   IPI00963932   IPI00964207   IPI01014359   IPI00967103   IPI00964746   IPI00968285   IPI00964453   IPI00965137   IPI00967794   IPI00967265   IPI00967526   IPI00967504   IPI00966307   IPI00968034   
Protein Interaction databases
DIP (DOE-UCLA)Q9NX40
IntAct (EBI)Q9NX40
FunCoupENSG00000109180
BioGRIDOCIAD1
STRING (EMBL)OCIAD1
ZODIACOCIAD1
Ontologies - Pathways
QuickGOQ9NX40
Ontology : AmiGOprotein binding  mitochondrion  endosome  membrane  
Ontology : EGO-EBIprotein binding  mitochondrion  endosome  membrane  
NDEx NetworkOCIAD1
Atlas of Cancer Signalling NetworkOCIAD1
Wikipedia pathwaysOCIAD1
Orthology - Evolution
OrthoDB54940
GeneTree (enSembl)ENSG00000109180
Phylogenetic Trees/Animal Genes : TreeFamOCIAD1
HOVERGENQ9NX40
HOGENOMQ9NX40
Homologs : HomoloGeneOCIAD1
Homology/Alignments : Family Browser (UCSC)OCIAD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOCIAD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OCIAD1
dbVarOCIAD1
ClinVarOCIAD1
1000_GenomesOCIAD1 
Exome Variant ServerOCIAD1
ExAC (Exome Aggregation Consortium)OCIAD1 (select the gene name)
Genetic variants : HAPMAP54940
Genomic Variants (DGV)OCIAD1 [DGVbeta]
DECIPHER (Syndromes)4:48833244-48863834  ENSG00000109180
CONAN: Copy Number AnalysisOCIAD1 
Mutations
ICGC Data PortalOCIAD1 
TCGA Data PortalOCIAD1 
Broad Tumor PortalOCIAD1
OASIS PortalOCIAD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOCIAD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOCIAD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch OCIAD1
DgiDB (Drug Gene Interaction Database)OCIAD1
DoCM (Curated mutations)OCIAD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OCIAD1 (select a term)
intoGenOCIAD1
Cancer3DOCIAD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOCIAD1
Genetic Testing Registry OCIAD1
NextProtQ9NX40 [Medical]
TSGene54940
GENETestsOCIAD1
Huge Navigator OCIAD1 [HugePedia]
snp3D : Map Gene to Disease54940
BioCentury BCIQOCIAD1
ClinGenOCIAD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54940
Chemical/Pharm GKB GenePA134898158
Clinical trialOCIAD1
Miscellaneous
canSAR (ICR)OCIAD1 (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOCIAD1
EVEXOCIAD1
GoPubMedOCIAD1
iHOPOCIAD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:19:43 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.