Atlas of Genetics and Cytogenetics in Oncology and Haematology


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OCIAD2 (OCIA domain containing 2)

Identity

Alias (NCBI)-
HGNC (Hugo) OCIAD2
HGNC Alias symbMGC45416
HGNC Alias nameovarian cancer immunoreactive antigen domain containing 2
LocusID (NCBI) 132299
Atlas_Id 53075
Location 4p11  [Link to chromosome band 4p11]
Location_base_pair Starts at 48885380 and ends at 48906828 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FRYL (4p11) / OCIAD2 (4p11)OCIAD2 (4p11) / NFXL1 (4p12)RAPGEF2 (4q32.1) / OCIAD2 (4p11)
FRYL 4p11 / OCIAD2 4p11OCIAD2 4p11 / NFXL1 4p12RAPGEF2 4q32.1 / OCIAD2 4p11

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)OCIAD2   28685
Cards
Entrez_Gene (NCBI)OCIAD2    OCIA domain containing 2
Aliases
GeneCards (Weizmann)OCIAD2
Ensembl hg19 (Hinxton)ENSG00000145247 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145247 [Gene_View]  ENSG00000145247 [Sequence]  chr4:48885380-48906828 [Contig_View]  OCIAD2 [Vega]
ICGC DataPortalENSG00000145247
TCGA cBioPortalOCIAD2
AceView (NCBI)OCIAD2
Genatlas (Paris)OCIAD2
SOURCE (Princeton)OCIAD2
Genetics Home Reference (NIH)OCIAD2
Genomic and cartography
GoldenPath hg38 (UCSC)OCIAD2  -     chr4:48885380-48906828 -  4p11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OCIAD2  -     4p11   [Description]    (hg19-Feb_2009)
GoldenPathOCIAD2 - 4p11 [CytoView hg19]  OCIAD2 - 4p11 [CytoView hg38]
ImmunoBaseENSG00000145247
Genome Data Viewer NCBIOCIAD2 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK298305 AY472117 BC032808 BG748993 BI546814
RefSeq transcript (Entrez)NM_001014446 NM_001286773 NM_001286774 NM_152398
Consensus coding sequences : CCDS (NCBI)OCIAD2
Gene ExpressionOCIAD2 [ NCBI-GEO ]   OCIAD2 [ EBI - ARRAY_EXPRESS ]   OCIAD2 [ SEEK ]   OCIAD2 [ MEM ]
Gene Expression Viewer (FireBrowse)OCIAD2 [ Firebrowse - Broad ]
GenevisibleExpression of OCIAD2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)132299
GTEX Portal (Tissue expression)OCIAD2
Human Protein AtlasENSG00000145247-OCIAD2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ56VL3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ56VL3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ56VL3
PhosPhoSitePlusQ56VL3
Domains : Interpro (EBI)OCAD1/2    OCIA_dom   
Domain families : Pfam (Sanger)OCIA (PF07051)   
Domain families : Pfam (NCBI)pfam07051   
Conserved Domain (NCBI)OCIAD2
SuperfamilyQ56VL3
AlphaFold pdb e-kbQ56VL3   
Human Protein Atlas [tissue]ENSG00000145247-OCIAD2 [tissue]
HPRD14873
Protein Interaction databases
DIP (DOE-UCLA)Q56VL3
IntAct (EBI)Q56VL3
BioGRIDOCIAD2
STRING (EMBL)OCIAD2
ZODIACOCIAD2
Ontologies - Pathways
QuickGOQ56VL3
Ontology : AmiGOlysosome  endosome  Golgi apparatus  endocytosis  response to bacterium  positive regulation of receptor signaling pathway via JAK-STAT  hematopoietic stem cell homeostasis  
Ontology : EGO-EBIlysosome  endosome  Golgi apparatus  endocytosis  response to bacterium  positive regulation of receptor signaling pathway via JAK-STAT  hematopoietic stem cell homeostasis  
NDEx NetworkOCIAD2
Atlas of Cancer Signalling NetworkOCIAD2
Wikipedia pathwaysOCIAD2
Orthology - Evolution
OrthoDB132299
GeneTree (enSembl)ENSG00000145247
Phylogenetic Trees/Animal Genes : TreeFamOCIAD2
Homologs : HomoloGeneOCIAD2
Homology/Alignments : Family Browser (UCSC)OCIAD2
Gene fusions - Rearrangements
Fusion : MitelmanRAPGEF2/OCIAD2 [4q32.1/4p11]  
Fusion : QuiverOCIAD2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOCIAD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OCIAD2
dbVarOCIAD2
ClinVarOCIAD2
MonarchOCIAD2
1000_GenomesOCIAD2 
Exome Variant ServerOCIAD2
GNOMAD BrowserENSG00000145247
Varsome BrowserOCIAD2
ACMGOCIAD2 variants
VarityQ56VL3
Genomic Variants (DGV)OCIAD2 [DGVbeta]
DECIPHEROCIAD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOCIAD2 
Mutations
ICGC Data PortalOCIAD2 
TCGA Data PortalOCIAD2 
Broad Tumor PortalOCIAD2
OASIS PortalOCIAD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOCIAD2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DOCIAD2
Mutations and Diseases : HGMDOCIAD2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaOCIAD2
DgiDB (Drug Gene Interaction Database)OCIAD2
DoCM (Curated mutations)OCIAD2
CIViC (Clinical Interpretations of Variants in Cancer)OCIAD2
Cancer3DOCIAD2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOCIAD2
MedgenOCIAD2
Genetic Testing Registry OCIAD2
NextProtQ56VL3 [Medical]
GENETestsOCIAD2
Target ValidationOCIAD2
Huge Navigator OCIAD2 [HugePedia]
ClinGenOCIAD2
Clinical trials, drugs, therapy
MyCancerGenomeOCIAD2
Protein Interactions : CTDOCIAD2
Pharm GKB GenePA128394755
PharosQ56VL3
Clinical trialOCIAD2
Miscellaneous
canSAR (ICR)OCIAD2
HarmonizomeOCIAD2
DataMed IndexOCIAD2
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXOCIAD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:23:39 CEST 2021

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