Atlas of Genetics and Cytogenetics in Oncology and Haematology


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OCIAD2 (OCIA domain containing 2)

Identity

Alias_symbol (synonym)MGC45416
Other alias-
HGNC (Hugo) OCIAD2
LocusID (NCBI) 132299
Atlas_Id 53075
Location 4p11  [Link to chromosome band 4p11]
Location_base_pair Starts at 48885380 and ends at 48906828 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FRYL (4p11) / OCIAD2 (4p11)OCIAD2 (4p11) / NFXL1 (4p12)RAPGEF2 (4q32.1) / OCIAD2 (4p11)
FRYL 4p11 / OCIAD2 4p11OCIAD2 4p11 / NFXL1 4p12RAPGEF2 4q32.1 / OCIAD2 4p11

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OCIAD2   28685
Cards
Entrez_Gene (NCBI)OCIAD2  132299  OCIA domain containing 2
Aliases
GeneCards (Weizmann)OCIAD2
Ensembl hg19 (Hinxton)ENSG00000145247 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145247 [Gene_View]  chr4:48885380-48906828 [Contig_View]  OCIAD2 [Vega]
ICGC DataPortalENSG00000145247
TCGA cBioPortalOCIAD2
AceView (NCBI)OCIAD2
Genatlas (Paris)OCIAD2
WikiGenes132299
SOURCE (Princeton)OCIAD2
Genetics Home Reference (NIH)OCIAD2
Genomic and cartography
GoldenPath hg38 (UCSC)OCIAD2  -     chr4:48885380-48906828 -  4p11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OCIAD2  -     4p11   [Description]    (hg19-Feb_2009)
EnsemblOCIAD2 - 4p11 [CytoView hg19]  OCIAD2 - 4p11 [CytoView hg38]
Mapping of homologs : NCBIOCIAD2 [Mapview hg19]  OCIAD2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK298305 AY472117 BC032808 BG748993 BI546814
RefSeq transcript (Entrez)NM_001014446 NM_001286773 NM_001286774 NM_152398
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OCIAD2
Cluster EST : UnigeneHs.95835 [ NCBI ]
CGAP (NCI)Hs.95835
Alternative Splicing GalleryENSG00000145247
Gene ExpressionOCIAD2 [ NCBI-GEO ]   OCIAD2 [ EBI - ARRAY_EXPRESS ]   OCIAD2 [ SEEK ]   OCIAD2 [ MEM ]
Gene Expression Viewer (FireBrowse)OCIAD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)132299
GTEX Portal (Tissue expression)OCIAD2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ56VL3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ56VL3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ56VL3
Splice isoforms : SwissVarQ56VL3
PhosPhoSitePlusQ56VL3
Domains : Interpro (EBI)OCIA   
Domain families : Pfam (Sanger)OCIA (PF07051)   
Domain families : Pfam (NCBI)pfam07051   
Conserved Domain (NCBI)OCIAD2
DMDM Disease mutations132299
Blocks (Seattle)OCIAD2
SuperfamilyQ56VL3
Human Protein AtlasENSG00000145247
Peptide AtlasQ56VL3
HPRD14873
IPIIPI00555902   IPI00181546   IPI00967731   IPI00964006   
Protein Interaction databases
DIP (DOE-UCLA)Q56VL3
IntAct (EBI)Q56VL3
FunCoupENSG00000145247
BioGRIDOCIAD2
STRING (EMBL)OCIAD2
ZODIACOCIAD2
Ontologies - Pathways
QuickGOQ56VL3
Ontology : AmiGOmitochondrial inner membrane  endosome  
Ontology : EGO-EBImitochondrial inner membrane  endosome  
NDEx NetworkOCIAD2
Atlas of Cancer Signalling NetworkOCIAD2
Wikipedia pathwaysOCIAD2
Orthology - Evolution
OrthoDB132299
GeneTree (enSembl)ENSG00000145247
Phylogenetic Trees/Animal Genes : TreeFamOCIAD2
HOVERGENQ56VL3
HOGENOMQ56VL3
Homologs : HomoloGeneOCIAD2
Homology/Alignments : Family Browser (UCSC)OCIAD2
Gene fusions - Rearrangements
Fusion : MitelmanRAPGEF2/OCIAD2 [4q32.1/4p11]  [t(4;4)(p11;q32)]  
Fusion: TCGAFRYL 4p11 OCIAD2 4p11 LUAD PRAD
Fusion: TCGAOCIAD2 4p11 NFXL1 4p12 BLCA
Fusion: TCGARAPGEF2 4q32.1 OCIAD2 4p11 BLCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOCIAD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OCIAD2
dbVarOCIAD2
ClinVarOCIAD2
1000_GenomesOCIAD2 
Exome Variant ServerOCIAD2
ExAC (Exome Aggregation Consortium)OCIAD2 (select the gene name)
Genetic variants : HAPMAP132299
Genomic Variants (DGV)OCIAD2 [DGVbeta]
DECIPHEROCIAD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOCIAD2 
Mutations
ICGC Data PortalOCIAD2 
TCGA Data PortalOCIAD2 
Broad Tumor PortalOCIAD2
OASIS PortalOCIAD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOCIAD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOCIAD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OCIAD2
DgiDB (Drug Gene Interaction Database)OCIAD2
DoCM (Curated mutations)OCIAD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OCIAD2 (select a term)
intoGenOCIAD2
Cancer3DOCIAD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOCIAD2
Genetic Testing Registry OCIAD2
NextProtQ56VL3 [Medical]
TSGene132299
GENETestsOCIAD2
Target ValidationOCIAD2
Huge Navigator OCIAD2 [HugePedia]
snp3D : Map Gene to Disease132299
BioCentury BCIQOCIAD2
ClinGenOCIAD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD132299
Chemical/Pharm GKB GenePA128394755
Clinical trialOCIAD2
Miscellaneous
canSAR (ICR)OCIAD2 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOCIAD2
EVEXOCIAD2
GoPubMedOCIAD2
iHOPOCIAD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:47:50 CEST 2017

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