Atlas of Genetics and Cytogenetics in Oncology and Haematology


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OCLM (oculomedin)

Identity

Other aliasTISR
HGNC (Hugo) OCLM
LocusID (NCBI) 10896
Atlas_Id 71090
Location 1q31.1  [Link to chromosome band 1q31]
Location_base_pair Starts at 186400572 and ends at 186401455 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OCLM   8103
Cards
Entrez_Gene (NCBI)OCLM  10896  oculomedin
AliasesTISR
GeneCards (Weizmann)OCLM
Ensembl hg19 (Hinxton)ENSG00000262180 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000262180 [Gene_View]  chr1:186400572-186401455 [Contig_View]  OCLM [Vega]
ICGC DataPortalENSG00000262180
TCGA cBioPortalOCLM
AceView (NCBI)OCLM
Genatlas (Paris)OCLM
WikiGenes10896
SOURCE (Princeton)OCLM
Genetics Home Reference (NIH)OCLM
Genomic and cartography
GoldenPath hg38 (UCSC)OCLM  -     chr1:186400572-186401455 +  1q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OCLM  -     1q31.1   [Description]    (hg19-Feb_2009)
EnsemblOCLM - 1q31.1 [CytoView hg19]  OCLM - 1q31.1 [CytoView hg38]
Mapping of homologs : NCBIOCLM [Mapview hg19]  OCLM [Mapview hg38]
OMIM604301   
Gene and transcription
Genbank (Entrez)AF142063 BC069096 BC093987 BC093989
RefSeq transcript (Entrez)NM_022375
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OCLM
Cluster EST : UnigeneHs.679230 [ NCBI ]
CGAP (NCI)Hs.679230
Alternative Splicing GalleryENSG00000262180
Gene ExpressionOCLM [ NCBI-GEO ]   OCLM [ EBI - ARRAY_EXPRESS ]   OCLM [ SEEK ]   OCLM [ MEM ]
Gene Expression Viewer (FireBrowse)OCLM [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10896
GTEX Portal (Tissue expression)OCLM
Human Protein AtlasENSG00000262180-OCLM [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5M6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5M6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5M6
Splice isoforms : SwissVarQ9Y5M6
PhosPhoSitePlusQ9Y5M6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OCLM
DMDM Disease mutations10896
Blocks (Seattle)OCLM
SuperfamilyQ9Y5M6
Human Protein Atlas [tissue]ENSG00000262180-OCLM [tissue]
Peptide AtlasQ9Y5M6
HPRD16054
IPIIPI00001619   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5M6
IntAct (EBI)Q9Y5M6
FunCoupENSG00000262180
BioGRIDOCLM
STRING (EMBL)OCLM
ZODIACOCLM
Ontologies - Pathways
QuickGOQ9Y5M6
Ontology : AmiGOvisual perception  
Ontology : EGO-EBIvisual perception  
NDEx NetworkOCLM
Atlas of Cancer Signalling NetworkOCLM
Wikipedia pathwaysOCLM
Orthology - Evolution
OrthoDB10896
GeneTree (enSembl)ENSG00000262180
Phylogenetic Trees/Animal Genes : TreeFamOCLM
HOVERGENQ9Y5M6
HOGENOMQ9Y5M6
Homologs : HomoloGeneOCLM
Homology/Alignments : Family Browser (UCSC)OCLM
Gene fusions - Rearrangements
Fusion: Tumor Portal OCLM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOCLM [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OCLM
dbVarOCLM
ClinVarOCLM
1000_GenomesOCLM 
Exome Variant ServerOCLM
ExAC (Exome Aggregation Consortium)ENSG00000262180
GNOMAD BrowserENSG00000262180
Genetic variants : HAPMAP10896
Genomic Variants (DGV)OCLM [DGVbeta]
DECIPHEROCLM [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOCLM 
Mutations
ICGC Data PortalOCLM 
TCGA Data PortalOCLM 
Broad Tumor PortalOCLM
OASIS PortalOCLM [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOCLM  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOCLM
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OCLM
DgiDB (Drug Gene Interaction Database)OCLM
DoCM (Curated mutations)OCLM (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OCLM (select a term)
intoGenOCLM
Cancer3DOCLM(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604301   
Orphanet
MedgenOCLM
Genetic Testing Registry OCLM
NextProtQ9Y5M6 [Medical]
TSGene10896
GENETestsOCLM
Target ValidationOCLM
Huge Navigator OCLM [HugePedia]
snp3D : Map Gene to Disease10896
BioCentury BCIQOCLM
ClinGenOCLM
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10896
Chemical/Pharm GKB GenePA31892
Clinical trialOCLM
Miscellaneous
canSAR (ICR)OCLM (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOCLM
EVEXOCLM
GoPubMedOCLM
iHOPOCLM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:19:46 CET 2017

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